Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022007.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq1129 176 7e-41 seq519 161 2e-36 seq1694 156 7e-35 >seq1129 Length=1508174 Score = 176 bits (194), Expect = 7e-41 Identities = 280/393 (71%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 1479 AATTTTGCATTTTTTAATGTCCAGTTCCTCGGTGATGTATTTTCCTTTTTATCGAGGAAA 1538 |||| |||||||| | ||| | ||| | | | |||||||| |||||| |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1539 TCTTTATAGCTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTA 1598 |||||||||| || || || |||||||| |||| | ||||||||| | | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1599 ATTTGAACTGGTTTTCCGTATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAATCAAC 1658 ||| |||| ||||| || || |||||||| ||||||| || | | | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA-ATCTTTTTGCCCCCAATCAAA 679276 Query 1659 TCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGCTACGTCATCAATGACGTTATACTC 1717 |||||| | ||||| | ||||| || |||| |||| ||| ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGT 679217 Query 1718 CACATCAT--TTGAATAGACCCTAGAATTGAAGTCTAGGTGA---CCACTCAAGTAATTA 1772 |||||| | ||||| | | ||||| |||| |||| || | | ||||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1773 TGCCTACCTAGAGCACGAGCCCACATCGTCTTGCCAGTCCTCGAAT--CACCTTCGACGA 1830 || | | || | || ||| | | || ||||| | |||| | ||||| | || Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCC--TATTCGACTTGGGCCTTCAATGA 679101 Query 1831 TGATACTAATAGCTCTAATTGGCCGCGCAGCGG 1863 | ||||| ||| |||| ||||| |||| ||| Sbjct 679100 TTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 161 bits (178), Expect = 2e-36 Identities = 182/241 (76%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1479 AATTTTGCATTTTTTAATGTCCAGTTCCTCGGTGATGTATTTTCCTTTTTATCGAGGAAA 1538 |||| ||||||| || |||| ||| | | | | |||||||| ||||| |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1539 TCTTTATAGCTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTA 1598 ||||||||| || ||||| | | ||| ||||| ||||||||||| |||||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1599 ATTTGAACTGGTTTTCCGTATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAATCAAC 1658 |||| ||| |||| | | |||||||| ||||||| | | || |||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1659 TCTTTCCAGTG----CTTTAGCTTTAGGTA-GTGCGGAGCTACGTCATCAATGACGTTAT 1713 |||||||| || || | ||||| ||| ||| |||||||| ||||||||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTAT 1742490 Query 1714 A 1714 | Sbjct 1742491 A 1742491 >seq1694 Length=789422 Score = 156 bits (172), Expect = 7e-35 Identities = 222/308 (72%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 1479 AATTTTGCATTTTTTAATGTCCAGTTCCTCGGTGATGTATTTTCCTTTTTATCGAGGAAA 1538 |||| |||||||| | ||||| ||| | | | |||||||| || ||| ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1539 TCTTTATAGCTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTA 1598 ||||||||| || || || |||||||| |||| |||||||||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1599 ATTTGAACTGGTTTTCCGTATTTGCAATTTGTTTGCCAGTTCATCTGGGCCCCAATCAAC 1658 |||||||| |||| || || ||||||| ||||||| | | || ||||||| || Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1659 TCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGCTACGTCATCAATGACGTTATACTC 1717 |||||| | ||||| | ||||| || |||| |||||| | ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1718 CACATCAT--TTGAATAGACCCTAGAATTGAAGTCTAGGTGACCACTCAAGTAATTATGC 1775 |||||| | ||||| | | ||||| || |||||| || | ||||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATGA 599576 Query 1776 CTACCTAG 1783 |||| || Sbjct 599575 TTACCGAG 599568 Score = 116 bits (128), Expect = 6e-23 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1479 AATTT-TGCATTTTTTAATGTCCAGTTCCTCGGTGATGTATTTTCCTTTTTATCGAGGAA 1537 ||||| ||||| || | || ||| ||| || | | |||||||| |||||| | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1538 ATCTTTATAGCTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTT 1597 |||| | ||| || || || | | ||||||||| ||||||||||| ||||||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1598 AATTTGAACTGGTTTTCCGTATTTGCAATTTGTTTGCCA 1636 ||||| ||| ||||| || || |||||||| ||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8287699010920