Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022073.1 Length=2825 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq3069 87.8 3e-14 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 166/235 (71%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 1373 TTCCGGAGGTTGTGGTTGAACTGGATCTGGATGGTGATGATGTCGTGGTTGGTGAAACAA 1432 |||| ||| |||| |||||| || |||||||| ||||||||||||||| || | | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1433 GGCCTGCTGTGGTGCTCG-GTGATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAA 1491 | || || |||| ||| || |||||||||||||||| |||| | | ||||| | | Sbjct 1741937 TGTCTCCTCTGGT-TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1492 AACGCCACTCCTGGCTTGAATTGC--AGTGATGTCTTCCCCGGTGCGTAAATCCATAGTT 1549 || ||| | || ||| || ||||| | |||||||||| | |||||||| ||| Sbjct 1741996 TACACCATTGTTGCACTGA---GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1550 CTGGCAGTGGATGCTGAT-GAAGTAACTGCAGCCGCAGTCAAGATCAATTCTCTT 1603 | |||| ||| || | | | || |||| || |||| | |||||| | ||| Sbjct 1742053 CCTACAGTTAATG-TGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 >seq3069 Length=10854949 Score = 87.8 bits (96), Expect = 3e-14 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1370 GCCTTCCGGAGGTTGTGGTTGAACTGGATCTGGATGGTGATGATGTCGTGGTTGGTGAAA 1429 || |||| ||||||| |||||| || |||||||| ||||||||||||| | || | Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1430 CAAGGCCTGCTGTGGTGCTCGGTGATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATA 1489 | || || || ||||| || | ||||||||| ||||||||| | | || || ||| Sbjct 3754465 AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1490 AAAACGCCACTCCTGGCTTGAATTGCAGTGATGTCTTCCCCGGTGCGTAAATCCATAGTT 1549 | ||| || | || | | | ||||| | || ||| ||||| |||| ||| ||| Sbjct 3754525 TATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1550 CTGGCA 1555 || ||| Sbjct 3754585 CTTGCA 3754590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8927666232300