Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022229.1 Length=2775 Score E Sequences producing significant alignments: (Bits) Value seq519 89.7 9e-15 seq1694 82.4 1e-12 >seq519 Length=3254320 Score = 89.7 bits (98), Expect = 9e-15 Identities = 241/362 (67%), Gaps = 5/362 (1%) Strand=Plus/Plus Query 2233 CCTCTAGCGGACCTTCCATCGATCTGAAACTCACCCCATTCGATGGTGTCTCCGTCCTTG 2292 || ||||| || |||||||| || ||||| ||| | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2293 TCAATATAGGACTTGACGTCAGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGT 2352 || || || || || || | |||| | ||||||| |||| ||| ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2353 GCTGACCTGGTTGTG-GAGACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTCC 2411 | ||| | | | || | | ||| || |||| | ||| ||||| | | || || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2412 TTCGAACTGCATAAGCACAGGGAGATGTGGTTCCCCATTTTCATGAAGCTCTTTGCAGAT 2471 | ||| || ||||| ||| | | |||||||||||| || || || |||||||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2472 TTTAATGTATAATTTGTTTACTGGGGT-TTTTAGGTTTTGTAATTGGGAAAGTGCTTCTG 2530 | | ||| || || | || | |||| || ||| ||| | || ||| || || Sbjct 1743381 TCTTATGAAT-TTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2531 ATAGAGAAAGAGAGCAATGTGGATATGTGAGGAAATAATTTTTAGCAATATATTTTAAAT 2590 | | || || || ||| | |||||||||| |||||| || || |||| |||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT-GCTATTTATTCTAAAC 1743498 Query 2591 CT 2592 || Sbjct 1743499 CT 1743500 Score = 77.0 bits (84), Expect = 6e-11 Identities = 149/220 (68%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 1629 CCAATTCTTTAGAGATATAtttttttCTTCGTCTAGATATTCTTTATATGATGATGTTGG 1688 ||||||||| |||| || ||||| || | ||||| | |||||||| |||| Sbjct 1742272 CCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTC 1742331 Query 1689 GCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTA 1748 | | ||| ||| | | ||| | || || || |||||||||| || | | |||| | Sbjct 1742332 ACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAA 1742391 Query 1749 CTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT------- 1801 ||| ||| |||||||| || | || |||| || |||||||| |||||| Sbjct 1742392 CTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACA 1742451 Query 1802 --TTAAATAATGCGGGT-CTACGTCATCAATGACATTGTA 1838 || || ||| ||| |||| |||||||||||||| || Sbjct 1742452 TCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 1293 ACTCCTTCCTGATGTTGTGATTGAATCGGATTTGTATTGAAATTATGTCTTTGTTCATGT 1352 || ||| | |||| |||| ||||| | ||||| || || ||||| | ||| ||| Sbjct 596655 ACCCCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGT 596596 Query 1353 TGAGTGGCCTCTCGTTGTGGCTGGTGATCTTGAAATAGAGGGGATTGTTTATCTCCCAGA 1412 ||| ||| || | ||| | || |||||||||||||| |||| || ||||| Sbjct 596595 TGAATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAG 596536 Query 1413 TAAAAACGCCATTCGTTGC-CTGATGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATG 1471 | | |||||||| ||||| | || |||||| ||||||| |||| ||||||| Sbjct 596535 CATATACGCCATT-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATC 596477 Query 1472 GTTGGTGCAGTTGATATGGAGATAGTATGAGCAGCCGCA 1510 ||| |||| || ||||| | || |||| ||| || || Sbjct 596476 GTTCCTGCAATTAATATGTTGGTAATATGTGCAACCACA 596438 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2236 CTAGCGGACCTTCCATCGATCTGAAACTCACCCCATTCGATGGTGTCTCCGTCCTTGTCA 2295 ||||| || ||||||||||| ||||| |||||||| || | | |||||| ||||| ||| Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2296 ATATAGGACTTGACGTCAGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATG 2351 || || || || || | |||| ||||| | ||||| |||||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTG 599142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8767672213800