Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022645.1 Length=2804 Score E Sequences producing significant alignments: (Bits) Value seq519 86.0 1e-13 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 1339 TTCCTGATGTTGTGGTTGAACCGTATCTGGAGTGTGATGATATCGTGGTGCATGTTCCCT 1398 ||||||| |||| |||||| ||||||||| | ||||| ||||||| |||| | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1399 GGTCTCTTGTCGTGGTTGGTGATTGC--GAAATAGAGGGGATTTGTTATTTCCCAAGTAA 1456 ||||| | | || || ||| | | ||||||||||| ||||| || |||||||| | Sbjct 1741937 TGTCTCCTCTGGT--TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1457 AAACGCCATTCTTTGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1511 | || ||||| || ||| || ||||| ||||||| ||| || ||||||| Sbjct 1741995 ATACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8860468744530