Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023034.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq519 98.7 2e-17 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 246/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 2241 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2300 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2301 TCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGT 2360 || | || || || || | ||| ||||||||| |||| ||| ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2361 GCTGCCCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTTGGCACTTGTACTTTCCT 2420 | ||| | ||| | | ||| || |||| | ||| ||| | | || ||| Sbjct 1743262 ATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCT 1743321 Query 2421 TCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATCTTCGTGGAGTTCTCTGCAGATT 2480 ||| ||||| || || || | ||| |||||||| | ||| |||||| |||| | | Sbjct 1743322 GTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACT 1743381 Query 2481 TTTATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTCTGAAGTTGGGTGAGTGCTTCCT 2538 ||||| | |||| | || | |||| ||| ||| | | || || || || || | Sbjct 1743382 CTTATG-AATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2539 CTTTAGTAAGAGAGCATTGTGGATAAGTGAGAAAGAAATTTTTGGCATATATTTGAAAAC 2598 |||| || || || ||| ||| ||||||| || ||||||| || |||| ||| | Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAACC 1743499 Query 2599 GTTTGGGAG 2607 ||||||| Sbjct 1743500 --TTGGGAG 1743506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8722883206088