Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023312.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq1694 78.8 2e-11 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2229 CTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGT 2288 |||| || | || || | |||||||||||||||||| ||||| | |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2289 AATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGT 2348 | || || ||||| || ||||| || || |||| ||| || |||| ||| | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2349 TTGGGTGGAATTG 2361 |||| |||||||| Sbjct 599154 TTGGATGGAATTG 599142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726083089876