Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023849.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq1129 84.2 4e-13 >seq1129 Length=1508174 Score = 84.2 bits (92), Expect = 4e-13 Identities = 206/308 (67%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAGATAG-TGGGAATTCCACCTTTAATTTGAATGGGTTTCCCATA 1753 |||||||| || | ||||| | ||||| | |||||||||| ||| |||||||||||| Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTA-ACCTTTAATTAGAACGGGTTTCCCATA 679315 Query 1754 TTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTG------CTT 1807 || || |||||||| ||| | | | |||| || || || || | || ||| Sbjct 679314 CTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTT 679256 Query 1808 TAGATAGTGGGGATCAACGTCATCAATGACGTTATACCAAGCATTATTGCTATATACTCT 1867 || || |||| || ||||| ||||| ||||| |||| |||| ||||| Sbjct 679255 TAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGA 679196 Query 1868 TGGGCTGAGATC---GAGATGCCCACATAAATAATTATGTGGCCCTAATGACCTAGCCCA 1924 | | ||| ||| | |||| || | |||||||| | | | ||| | ||| | Sbjct 679195 TTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAA 679136 Query 1925 CATTGTTTTACCTGTTCGACTATGCCCTTCAATTACAATTGATTTAGGTCTAATAGGCCG 1984 | ||||| ||| ||||||| | |||||||| | || |||||||||| |||| Sbjct 679135 AGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCA 679076 Query 1985 CGCAGCGG 1992 |||| ||| Sbjct 679075 CGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604487505932