Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024009.1 Length=2772 Score E Sequences producing significant alignments: (Bits) Value seq519 123 4e-25 seq1694 122 2e-24 seq3069 118 2e-23 seq2957 113 8e-22 seq1129 82.4 1e-12 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 171/232 (74%), Gaps = 17/232 (7%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGATTGAACTGGATTCTGATGTGGATGATGTCGTGGTTCATGTTGAAT 1361 |||||||| |||| ||||| || || ||| | |||||||||||||| |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1362 GG---CCTCTGG--TCGTGGTTGAGGATCTTGAAATAGAGGGGATTTGTTACCTCCCA-- 1414 | ||||||| ||||| | |||||||||||||||| ||||| || ||||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTT-----ATCTTGAAATAGAGGGAATTTGGTAATTCCCAAG 1741991 Query 1415 GATATACACGCCATTCATTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCA 1473 |||||||| ||||| |||| |||||| ||||| ||||||| ||| | |||||| Sbjct 1741992 GATATACA--CCATT-GTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCA 1742047 Query 1474 TGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAA 1525 | ||| ||||| |||||| ||| ||| ||| ||||||| || ||||| Sbjct 1742048 TCGTTCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 86.0 bits (94), Expect = 1e-13 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 2081 ATTGGAGGTGCAAAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAA 2140 ||| |||| || || || | | | |||||| || |||||||||||||| | ||| ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2141 -TCTTTAGGGAGTTTCTCCCTAATTATTGCCAGAGCAGCATCAGCGGACCCTGAATTCAG 2199 ||||| ||| |||||| | |||||| | || ||||| | | |||| | Sbjct 1748861 CTCTTT-GGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAATTAAT 1748919 Query 2200 AGCTTCTGCAGCAGCATCATTAACTCTCTGTTGACCTCCTCTAGCAGATCTTCCATCGAC 2259 ||||| || |||| |||| | | | || ||| ||| ||||||||||||| | Sbjct 1748920 CGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAAT 1748979 Query 2260 CTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGA--CATCG 2317 ||||| ||| |||| || | || || || ||||| || ||||| || || | |||| Sbjct 1748980 TTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCA 1749039 Query 2318 GATGAGGACTTAGCTCCCTGGAAATTTGGGTGGAAATG 2355 | | || ||||| || | |||||| ||||| || Sbjct 1749040 AAGGTTGATTTAGCATATTGAACATTTGGATGGAATTG 1749077 >seq1694 Length=789422 Score = 122 bits (134), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 1300 CCTTCCTGAGGTTGTGATTGAACTGGATTCTGATGTGGATGATGTCGTGGTTCATGTTGA 1359 ||| | ||| |||| |||||||| ||| ||| | || ||||||||||| |||||| Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1360 ATGG---CCTCTGGT--CGTGGTTGAGGATCTTGAAATAGAGGGGATTTGTTACCTCCCA 1414 |||| ||||| || |||| | |||||||||||||| |||||| ||| ||||| Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTT-----ATCTTGAAATAGAGTAGATTTGGTACTTCCCA 596538 Query 1415 GATATACACGCCATTCATTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCA 1473 ||| |||||||| |||| | |||| |||||| ||||||| |||| |||||| Sbjct 596537 AGCATATACGCCATT-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCA 596479 Query 1474 TGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCA 1524 | ||| ||| || || ||| ||| |||| ||| ||||| | || |||| Sbjct 596478 TCGTTCCTGCAATTAATATGTTGGTAATATGTGCAACCACAATATATATCA 596428 Score = 84.2 bits (92), Expect = 4e-13 Identities = 102/136 (75%), Gaps = 10/136 (7%) Strand=Plus/Minus Query 1302 TTCCTGAGGTTGTGATTGAACTGGATTCTGATGTGGATGATGTCGTGGTTCATGTTGAAT 1361 ||||||| || || ||||||| || ||| | ||||||||| |||| |||||||| Sbjct 600229 TTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTGAAT 600170 Query 1362 GG---CCTCTGGTCGTG--GTTGAGGATCTTGAAATAGAGGGGATTTGTTACCTCCCAGA 1416 || |||||||| || ||| |||||||||||||||||||||| ||| || || Sbjct 600169 GGTCTCCTCTGGT-GTCATGTT----ATCTTGAAATAGAGGGGATTTGGTACTTCTCAAG 600115 Query 1417 TATACACGCCATTCAT 1432 |||| ||| |||| || Sbjct 600114 TATATACGTCATTGAT 600099 Score = 82.4 bits (90), Expect = 1e-12 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 2119 ATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCCAGAGCAGC 2178 ||||||||||| | | || ||| ||| ||| |||||| | |||||| | | || Sbjct 599377 ATTATGATATT-ATAGATGAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATGTTGC 599319 Query 2179 ATCAGCGGACCCTGAATTCAGAGCTTCTGCAGCAGCATCATTAACTCTCTGTTGACCTCC 2238 ||| ||||| ||||| | |||| | || | |||| | || | || || Sbjct 599318 ATCTCTGGACCTAGAATTAATCACTTCAGTGTATACACCTGCAACTGTTTGCTTACATCT 599259 Query 2239 TCTAGCAGATCTTCCATCGACCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTC 2298 ||||||||||||||||||| ||||| |||||||| || | ||| || || ||||| || Sbjct 599258 CCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTC 599199 Query 2299 GATGTAGGACTTGACAT 2315 ||||| || || |||| Sbjct 599198 AATGTATGATTTAACAT 599182 >seq3069 Length=10854949 Score = 118 bits (130), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGATTGAACTGGATTCTGATGTGGATGATGTCGTGGTTCATGTTGAAT 1361 |||||||||||| ||||| || || ||| | ||||||||||||| |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1362 GG---CCTCTG--GTCGTGGTTGAGGATCTTGAAATAGAGGGGATTTGTTACCTCCCAGA 1416 || |||||| ||| || | | ||||||||| |||||||||| ||| || || | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTT-----AACTTGAAATATAGGGGATTTGGTACTTCTCAAA 3754522 Query 1417 TATACACGCCATTCATTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATG 1475 |||| ||| |||| |||| || ||| | ||||| || ||| ||||| ||| ||| Sbjct 3754523 TATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATT 3754581 Query 1476 GTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTT 1532 ||| | ||| || |||| | |||||||| ||| ||||| | || || ||| | ||| Sbjct 3754582 GTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTT 3754638 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 167/228 (73%), Gaps = 9/228 (4%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGATTGAACTGGATTCTGATGTGGATGATGTCGTGGTTCATGTTGAAT 1361 ||| ||||||||| |||||||| || ||||| ||||||| | | || |||||||| Sbjct 1238755 TTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAAT 1238814 Query 1362 GGCCTCTGGTCGTGGTTGAGG--ATCTTGAAATAGAGGGGATTTGTTACCTCCCAGATAT 1419 | ||| | ||| | | | |||||||||||| || |||||| ||| ||| || ||| Sbjct 1238815 GATCTCCTTTGGTG--TCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTAT 1238872 Query 1420 ACACGCCATTCATTGC-CTGAGCTGCAGTGATGGGTTCC-CCTGTGCGTGAATCCATGGT 1477 | || |||| |||| |||||| ||| ||| || |||| | ||||| ||||||| || Sbjct 1238873 ATACTTCATT-GTTGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCATTGT 1238930 Query 1478 TGTGGCAGTTGATGTGTACGTAGTAT-GAGCACCCACAGTTTAGATCA 1524 | |||| ||||| | ||| ||| | ||| ||||| ||||||||| Sbjct 1238931 TCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1129 Length=1508174 Score = 82.4 bits (90), Expect = 1e-12 Identities = 235/354 (66%), Gaps = 23/354 (6%) Strand=Plus/Minus Query 1655 TTTTCCTCGT---CTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAG 1711 |||||||| | ||| ||| |||||||||| | || ||||| || | ||| Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1712 ATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAG 1771 || | || | | ||||||||| |||| || ||||| |||||| || |||||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1772 TCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT------TAGGTA-GTGGGGGTCTAC 1824 || |||| |||| || || ||||| | ||||| || ||| ||||| || ||| Sbjct 679295 TCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TAC 679238 Query 1825 GTCATCAATGACGTTGTACCAGGAGGCATTT--GAATA--GATTTTAGGGCTCAGATCTA 1880 ||||| ||||| || || | |||| ||||| ||||| | | | ||||| Sbjct 679237 ATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTT----GTTGAAATCTA 679182 Query 1881 A---ATGGCCACATAAGTAATTATGTGGTCCCAAAGACCTGGCCCACATAGTCTGGCCCG 1937 | |||||| | ||||||||| | | | || | |||| | |||| | ||| Sbjct 679181 AGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTA 679122 Query 1938 TACGACTATCACCCTCGATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGG 1991 | ||||| || || |||| |||||||||||||| ||||| |||| ||| Sbjct 679121 TTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8758072572690