Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024012.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq519 149 1e-32 seq1129 145 1e-31 seq1694 132 8e-28 >seq519 Length=3254320 Score = 149 bits (164), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 1479 TCCAGTTCCTGAGTGATGAATTTTCCTCTTTGTCTAGGAAATCTTTATAGCTGGCACCCT 1538 |||| ||| |||| | | ||||||||| || |||||||||||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1539 CACCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCG- 1597 ||| ||| ||| | ||||||| ||||||||| |||||||||| ||| | |||||| Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGA 1742389 Query 1598 TATTTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCAATTCTTTCCAGTG----CTT 1653 | |||||||| ||||| | |||||| |||| | |||||||||||| || || Sbjct 1742390 AACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTA 1742449 Query 1654 TAGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1695 | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742450 CATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 235/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 2092 TCCCCTAGCACTTCGTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTA-TCTCCGTCCT 2150 |||||||||| || ||| || || || || || | || || | ||| ||||| |||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTCTCCCTCCT 1743199 Query 2151 TGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAAAT 2210 | |||||||| || || || | ||| | ||||||| || | || ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2211 GTGCTGACCGTGTTGGGGAGACC-AGATCGAAGAATCTGTTATTCGTGCAGTTGTACTTC 2269 | | | |||| ||| || | || || |||| | ||| ||||| | | || Sbjct 1743260 GAATGGTTC-TGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTA 1743318 Query 2270 CCTTCGAACTGTATGAGCACATGGAGATGAGGCTGCCCATTCTCATGAAGCTCTCTGCAG 2329 ||| ||| || || || ||||| | ||| || | ||| || || || ||| |||| Sbjct 1743319 CCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCAC 1743378 Query 2330 ATTTTGATGAACTTTTTGTTTATCGGAGTATTT-AGG-TTTTGTAATTGTGAAAGTGCTT 2387 | | | ||||| ||| ||| | || ||| || ||| ||||| || |||| | || | Sbjct 1743379 ACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAA-GAGCAT 1743436 Query 2388 CTTCTTTGGTAAGAGAGCA-CTGGGGATAAGTGAGGAAATAGTTTTTG 2434 | ||||| || || || || || |||| |||||||||||| |||||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 >seq1129 Length=1508174 Score = 145 bits (160), Expect = 1e-31 Identities = 173/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1466 GCATTCTTGATAGTCCAGTTCCTGAGTGATGAATTTTCCTCTTTGTCTAGGAAATCTTTA 1525 ||||| | || ||| | ||| |||| | |||||||||||| ||||||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1526 TAGCTGGCACCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTTTAATTTGA 1585 |||| ||||| ||||| ||||| || | | ||||| ||||| | ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1586 ACTGGCTTTCCGTATTTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCAATTCTTTC 1645 || || || || || |||||||| ||||| | ||||| | |||| | ||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1646 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATA 1695 | ||||| | |||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1466 GCATTCTTGATAGTCCAGTTCCTGAGTGATGAATTTTCCTCTTTGTCTAGGAAATCTTTA 1525 ||||| | || ||||| ||| |||| | ||||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1526 TAGCTGGCACCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTTTAATTTGA 1585 ||| ||||| ||||| ||||| || | ||||||| || |||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1586 ACTGGCTTTCCGTATTTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCAATTCTTTC 1645 || | || || || ||||||| ||||| | |||||| |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1646 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1694 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 96.9 bits (106), Expect = 6e-17 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1498 ATTTTCCTCTTTGTCTAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAGAGCAC 1557 |||||||||||| || | ||||||| | ||| ||||| |||| ||||||| | || Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1558 GATTGCTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATT 1608 ||||| ||||||||| |||||||||| ||| || || || || |||||||| Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8242900637888