Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024116.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq3069 100 5e-18 seq519 100 5e-18 seq1694 80.6 5e-12 >seq3069 Length=10854949 Score = 100 bits (110), Expect = 5e-18 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 1306 TTCCTGATATTGTGGTTGAATCTTATCTGAATTGAAATGATGTCGTGGTTCATTAGAAAT 1365 ||||||| ||| ||||||| |||||| || ||||||||||||| | |||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1366 GGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAAC 1425 || || | |||||| ||||| ||||||||| ||||||||| | | || || ||| | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1426 ACGCCATTCTGTGC-TTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGT 1484 ||| |||| | ||| | ||| | ||||| || ||| ||||| ||| ||| ||| | Sbjct 3754528 ACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCT 3754586 Query 1485 GGCAGTTTATGGATATGAAGTATGAACAGCCACACTGTAAATCAACTCG 1533 ||| || ||| | | |||||| || ||||| | || || ||| || Sbjct 3754587 TGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACG 3754635 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 162/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 1306 TTCCTGATATTGTGGTTGAATCTTATCTGAATTGAAATGATGTCGTGGTTCATTAGAAAT 1365 ||||||| ||||| |||||| |||||| ||| |||||||||||||| | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1366 GGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCA--GATAA 1423 | || | |||| | |||||||||||||||||||| |||| | | ||||| |||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1424 ACACGCCATTCTGTGC-TTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTT 1482 ||| ||||| | ||| ||||| ||||| ||||||| ||| | ||||||| ||| Sbjct 1741997 ACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1483 GTGGCAGTTTATGGATATGAAGTATGAACAGCCACACTGTAAATCAA 1529 ||||| ||| | | | ||| || ||||| | || ||||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 1304 CCTTCCTGATATTGTGGTTGAATCTTATCTGAATTGAAATGATGTCGTGGTTCATTAGAA 1363 ||| | ||||||||| |||||| ||| || || || ||||||||||| | | Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1364 ATGGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAA 1423 |||| | | | |||| |||||||||||||||||| ||||| | | ||||| | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1424 ACACGCCATTCTGTGC-TTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTT 1482 | |||||||| | ||| |||| |||||| ||||||| |||| ||||||| ||| Sbjct 596532 ATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Query 1483 GTGGCAGTTTATGGATATGAAGTATGAACAGCCACACTGTAAATCA 1528 ||| || || | | | |||| || ||||| | || |||| Sbjct 596473 CCTGCAATTAATATGTTGGTAATATGTGCAACCACAATATATATCA 596428 Score = 78.8 bits (86), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2224 CTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGT 2283 |||| || | || || | |||||||||||||||||| ||||| | |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2284 AATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGT 2343 | || || ||||| || ||||| || || |||| ||| || |||| ||| | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2344 TTGGGTGGAATTG 2356 |||| |||||||| Sbjct 599154 TTGGATGGAATTG 599142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700484019572