Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024304.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value seq1129 192 1e-45 seq519 147 4e-32 seq1694 134 2e-28 seq3069 80.6 4e-12 >seq1129 Length=1508174 Score = 192 bits (212), Expect = 1e-45 Identities = 263/362 (73%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 1502 CATTTTCCTCTTTGTCTAGGAAGACTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCA 1561 ||||||||||||| |||||||| ||||||| | || || || |||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1562 CAATTGATGGGATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGGATTGCC 1621 |||||||||| | ||||||||| |||| || || || || ||||| || ||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1622 AGTCCTTTTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAGATAATGCGGGCTGA 1681 | | ||||| | ||||||| || |||||| | || |||||||||| ||| || | | Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1682 CATCATCTATGACATTATATTCAGCTTTATT-TGAATAAACTCTGGAATTAAAATCAA-- 1738 |||||||||||||||||||| || | ||| || | | ||| || ||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGA-ATACTGATTTGTTGAAATCTAAG 679180 Query 1739 -GATGTCCGCTCAAATAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTCCCCGTT 1797 |||| ||| | | |||||||| || | | || || ||| | | || || || || Sbjct 679179 TGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATT 679120 Query 1798 CGACTATCACCTTCAATGATAATACTAATAGGTCTCTCTGGCCGCGCAGCGGAATCCTTT 1857 ||||| ||||||||||| ||||| ||||||| ||||||| |||| ||| || ||| Sbjct 679119 CGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGGTAT--TTT 679062 Query 1858 CC 1859 || Sbjct 679061 CC 679060 >seq519 Length=3254320 Score = 147 bits (162), Expect = 4e-32 Identities = 184/244 (75%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 1465 AATTTAGCATTATGAAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCTAGGAA 1523 |||| |||||| || || |||| |||| |||| | |||||||||| || |||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1524 GACTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACAATTGATGGGATGCCTCCTTT 1583 ||||||| || ||||| | | ||| ||||| || |||||||||||||| ||||| Sbjct 1742311 ATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1584 AATTTGAACTGGCTTTCCG-TATTTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAATTA 1642 ||||| ||| | |||||| | ||||| || |||||| || ||||| ||||||| | Sbjct 1742371 AATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1643 ACTCTTTCCAGTG----TTTCATCTTTAGATA-ATGCGGGCTGACATCATCTATGACATT 1697 | |||||||| || | |||||||| || || | ||| |||||||| |||||||| Sbjct 1742430 ATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCT-ACATCATCAATGACATT 1742488 Query 1698 ATAT 1701 |||| Sbjct 1742489 ATAT 1742492 Score = 82.4 bits (90), Expect = 1e-12 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 1244 GTTATCTTGAAATAAAGGGGATTTGATATTTCCCAAATATATACGCCATTCTCTGC-TTG 1302 |||||||||||||| |||| ||||| || ||||||| |||||| ||||| | ||| || Sbjct 1741955 GTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATTGT-TGCACTG 1742013 Query 1303 AGGCACAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATATGGACGT 1362 | || ||||| ||||||| ||| | ||||||| ||| || ||||| || || || Sbjct 1742014 A-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAATGTGTTGGT 1742072 Query 1363 AAATGGAGCAGCCGCAGTTCAAGTCAATGCG 1393 || ||| || |||| | |||||||| Sbjct 1742073 AATATATGCAACCACAGTATATATCAATGCG 1742103 Score = 78.8 bits (86), Expect = 2e-11 Identities = 155/222 (70%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 1627 TTTTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAGATAA-TGCGGGCTGACATC 1685 ||||| || | |||||| |||||| | || ||||| |||| ||| || |||| ||||| Sbjct 1748484 TTTTGTGCACTAATTAATTCTTTCAAATGCTTCATTTTTAAGTAAGTGGGGGCA-ACATC 1748542 Query 1686 ATCTATGACATTATATTCAGCTTTATT-TGAATAAACTCTGGAATTAAAATCAAGATGTC 1744 ||| |||||||||||| || | ||| || | | ||| || ||||| | || Sbjct 1748543 ATCAATGACATTATATGTTGCATCATTGTGGA-ATACTGATTTTTTGAAATCTAATTGAT 1748601 Query 1745 CGCTCAAATAATTATGTGGGCCTAATGCTCGAGCCCA-CATCGTCTTCCCCGTTCGACTA 1803 | || | |||||||| |||| | || | ||||| || || || || ||| ||| Sbjct 1748602 CCCTAATGTAATTATGACGGCCGAGTGAGGGGGCCCAGCA--GTTTTTCCTATTCAACTT 1748659 Query 1804 TCACCTTCAATGATAATACTAATAGGTCTCTCTGGCCGCGCA 1845 |||||||||||| ||||| ||||||| | | | ||||| Sbjct 1748660 GGACCTTCAATGATTATACTTTTAGGTCTATATAGTTGCGCA 1748701 >seq1694 Length=789422 Score = 134 bits (148), Expect = 2e-28 Identities = 260/377 (69%), Gaps = 5/377 (1%) Strand=Plus/Minus Query 1465 AATTTAGCATTATGAAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCTAGGAA 1523 |||| ||||| || || ||||| |||| || | |||||||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAA 599814 Query 1524 GACTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACAATTGATGGGATGCCTCCTTT 1583 ||||||| || || || |||||||| |||| || ||||||| |||| | | ||| Sbjct 599813 ATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTT 599754 Query 1584 AATTTGAACTGGCTTTCCGTATTTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAATTAA 1643 ||||||||| | || || || ||||| | |||||| || ||||| ||||||| || Sbjct 599753 AATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAA 599694 Query 1644 CTCTTTCCAGTGTTTCATCTTTAGATAA-TGCGGGCTGACATCATCTATGACATTATATT 1702 |||||| | || |||||||||| ||| || | |||| ||||||| ||| |||||| | Sbjct 599693 TTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTATCTG 599635 Query 1703 CAGCTTTATTTGAATAAACTCTGGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTG 1762 || | ||| | | ||| || |||||| || ||||| | |||||||| Sbjct 599634 GTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGAT 599575 Query 1763 GGCCTAATGCTCGAGCCCACATCGTCTTCCCCGTTCGACTATCACCTTCAATGATAATAC 1822 || | | | || || | | || || ||||||| ||||||||||| ||| Sbjct 599574 TACC-GAGGAGTGGGCACAAACAATTTTGCCTATTCGACTTGGGCCTTCAATGATTATAG 599516 Query 1823 TAATAGGTCTCTCTGGC 1839 | ||||| | |||||| Sbjct 599515 TTTTAGGTTTATCTGGC 599499 Score = 105 bits (116), Expect = 1e-19 Identities = 140/186 (75%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 1178 TTGTGGTTGAACCGAATCTGGATGTGGTAAAT--CCTGGT-GTTGGTGTATGGTGGATCC 1234 |||| ||||||| | || ||||| | ||| | |||| |||| || |||||| ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTG--TCC 596584 Query 1235 TCCAC-GTTG-GTTATCTTGAAATAAAGGGGATTTGATATTTCCCAAATATATACGCCAT 1292 || | || | |||||||||||||| || |||||| || ||||||| ||||||||||| Sbjct 596583 TCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCAT 596524 Query 1293 TCTCTGC-TTGAGGCACAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTT 1351 | | ||| ||| |||||||| ||||||| |||| ||||||| ||| ||||| || Sbjct 596523 TGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1352 GATATG 1357 ||||| Sbjct 596464 AATATG 596459 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 1465 AATTTA-GCATTATGAAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCTAGGA 1522 |||||| |||| || |||| ||| |||| || | ||||||||||||| || | || Sbjct 596277 AATTTATGCATATTGGAGTGCCCAAT-TCTTCAGGGCCACATTTTCCTCTTTATCCATGA 596219 Query 1523 AGACTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACAATTGATGGGATGCCTCCTT 1582 | || | || || || || | | ||||||||| || |||||||||||||| |||| Sbjct 596218 AATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTT 596159 Query 1583 TAATTTGAACTGGCTTTCCGTATTTGCAGTTGGATTGCCA 1622 |||||| ||| || || || || ||||| || |||||| Sbjct 596158 TAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 4e-12 Identities = 169/242 (70%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 1122 TCGTCCAGA-CTTGGAAATTGAGAAATGCCTTGTGGAGATCCAACGCTTTCCTCGCGTTG 1180 ||||||||| |||| ||| | | ||||||| || | | ||| |||||||| |||| Sbjct 3754361 TCGTCCAGATCTTGAAAAAT-ATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTG 3754419 Query 1181 TGGTTGAACCGAATCTGGATGTGGTAAAT--CCTGGT-GTTGGTGTATGGTGGATCCTCC 1237 |||||| | |||||||| | || | |||| |||| | ||||| ||||| Sbjct 3754420 AAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTC--TCCTCT 3754477 Query 1238 ACGTTG----GTTATCTTGAAATAAAGGGGATTTGATATTTCCCAAATATATACGCCATT 1293 | || |||| ||||||||| |||||||||| || ||| |||||||||||| |||| Sbjct 3754478 --GGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATT 3754535 Query 1294 CTCTGC-TTGAGGCACAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTG 1352 | ||| | || | ||||| || ||| ||||| ||| ||| ||| |||| || Sbjct 3754536 GT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTA 3754594 Query 1353 AT 1354 || Sbjct 3754595 AT 3754596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8217301567584