Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024491.1 Length=2778 Score E Sequences producing significant alignments: (Bits) Value seq3069 80.6 5e-12 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1325 CAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCAT 1384 ||| |||||||| |||||| ||||| |||| |||| |||||||| |||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1385 CAGGAATGGCCTGTTGTGGTGTTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCA 1444 ||||| || | |||||| ||||| ||||||||||||||||||| | | || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1445 GATAAACACGCCACTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCA 1503 ||| | ||| || | | ||| | ||| | ||||| || ||| ||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1504 TGGTCGTGGCAGGCTAATG-CTATGAAGTATGAACAGCCGCAGGGTAGATCAACACG 1559 | || | ||| ||||| || | |||||| || || || || || |||||| Sbjct 3754580 TTGTTCTTGCA-ATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACG 3754635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8777271854910