Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024687.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq1129 102 1e-18 seq519 93.3 7e-16 seq2957 91.5 3e-15 >seq1129 Length=1508174 Score = 102 bits (112), Expect = 1e-18 Identities = 237/353 (67%), Gaps = 21/353 (6%) Strand=Plus/Minus Query 1680 TTTTCCTC---ATCGAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAG 1736 |||||||| ||| ||||| |||||||||| | | || ||||| || | ||| Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1737 ATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAG 1796 || | || | | ||||||||| |||| || ||||| |||||| ||||||||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1797 TCCCTCTGGGCCCCCATGATTTCTTTAAAGTG------CTTTAGGTAGTTGGGGTCTACG 1850 | | | | | |||| || | ||||| | || ||||| ||| |||| ||| Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1851 TCATCAATGACGTTGTACCATGCATCAT--TTGAATA--GATCTTAGGGCTCAGATCTAA 1906 ||||| ||||| || || |||||||| | ||||| ||| | | | | |||||| Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTT----GTTGAAATCTAA 679181 Query 1907 ---ATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTTCCCCGT 1963 |||||| | ||||||||| | | ||||| | ||| | | ||||| || | Sbjct 679180 GTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT 679121 Query 1964 ACGCCTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGG 2016 || || || ||||||| |||||||||||||| ||||| |||| ||| Sbjct 679120 TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 7e-16 Identities = 232/346 (67%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 2269 GCAGATCTTCCATCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGT-CTTCTCCAGA 2327 |||||||||||||| || ||||| || | ||||| | | |||||| | ||| || | Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2328 TAGGACTTGACGTCCGAGCTTGATTTAGCTCCATGAATGTTAGGATGGAAATGTGCTGAC 2387 || || || || | ||| ||||||||| |||| || ||||||| || | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2388 CTGGT-TGGCGATACCAGGTCGAAGAATCGGTTATTTGTGCACTGGTACTTCCCCTCGAA 2446 ||| | || |||| | ||| || |||| | ||| ||||| | | || || ||| Sbjct 1743268 CTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2447 CTGGATGAGCACGTGAAGATGAGGTTCCCCCTTTTCGTGAAGCTCTCTGCAGATCCTGAT 2506 ||||| || || || | ||| |||||||| || ||| || ||| |||| | || || Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTAT 1743386 Query 2507 GAtttttttGTTTACTGGGGGGTGTATGTTTTTTAATTGATAGAGGGCTTCTTTTTTAGT 2566 || |||| ||| ||| || | | |||| | |||| || || || | ||| || Sbjct 1743387 GAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGT 1743446 Query 2567 TAGAGAGCAT-TGGGGATAAGTGAGGAAGTAATTCTTAGCATTTAT 2611 || || ||| | |||| |||||||||| | ||| || |||||| Sbjct 1743447 GAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTAT 1743491 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 166/235 (71%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 1321 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTG---GGCAGTGATGATGTCTTGGTTC 1377 || |||||| | ||||||| |||||||||||||| | | ||||| || || ||| Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1378 ATGAGGAATCCCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCC 1437 ||| ||| || | ||||| |||||||||||||||| || ||||| | || ||| Sbjct 1238809 TTGAATGATCTCC---TTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCC 1238865 Query 1438 CAGATAAACACCCCATTCTGTGC-TTGAGCTGCAGTGATGGATTCC-CCTGTGCGTGAAT 1495 || || | || |||| | ||| ||||| ||| ||| || |||| | ||||| ||| Sbjct 1238866 TAGGTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAAT 1238923 Query 1496 CCATGGTTGTGGGGGTTGATGTGTACGTAGTTTGG-GCAGCCACACTCGAGGTCA 1549 |||| ||| ||| ||||| | ||| | ||| ||| ||||||| || ||| Sbjct 1238924 CCATTGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662085414116