Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025265.1 Length=2564 Score E Sequences producing significant alignments: (Bits) Value seq1129 123 4e-25 seq519 122 1e-24 seq1694 93.3 7e-16 >seq1129 Length=1508174 Score = 123 bits (136), Expect = 4e-25 Identities = 243/354 (69%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 1462 ATTTTCATGCTTGTCAAGGAACTCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCAC 1521 |||||| | || || ||||| |||||||| | || || || | |||||| || | | Sbjct 679416 ATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAA 679357 Query 1522 GATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCA 1581 ||||||||||| ||||||||| |||| || || || || || || || |||||||| Sbjct 679356 GATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA 679297 Query 1582 GTCACGTTGGGACCCAATTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGAC 1641 || || | |||||| | |||||| | || ||||| |||| ||| ||||| || Sbjct 679296 ATC-TTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTAC 679238 Query 1642 ATCATCAATGACGTTATATTCCACTTCAT--TTGAATAAACTTTAGAATTAAAGTGTA-- 1697 |||||| ||||| |||||| | |||| | ||||| || | || || | || Sbjct 679237 ATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAG 679180 Query 1698 -GATGTCCACTCAAGTAATTATGTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTC 1756 |||| || | | ||||||||| | | || |||||| | | || || || | Sbjct 679179 TGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCC--TA 679122 Query 1757 CTTGAAT--CACCCTCAATGATTATACTAATAGGTCTCTCTGGCCGCGCAGCGG 1808 | || | || |||||||||||||| ||||||| ||||||| |||| ||| Sbjct 679121 TTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 122 bits (134), Expect = 1e-24 Identities = 174/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1424 AATTTAGCATTATGAAGTGTCCACGCTTTTAGAGATGAATTTTCATGCTTGTCAAGGAAC 1483 |||| |||||| || || |||| || |||| | |||||| | || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1484 TCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTA 1543 |||||||| || ||||| | | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1544 ATTTGAACTGGCTTTCCG-TATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAATTAG 1602 |||| ||| | |||||| | || || || |||||||| || ||| |||||| | Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1603 CTCTTTCCAGTG----TTTCATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTAT 1658 |||||||| || | ||| |||| |||| |||| |||||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1659 AT 1660 || Sbjct 1742491 AT 1742492 Score = 100 bits (110), Expect = 5e-18 Identities = 207/298 (69%), Gaps = 14/298 (5%) Strand=Plus/Plus Query 1078 ATGTCGTCCAGACTTGGAAATTTAGAAATGCCTTGTGGAGATCCAACGCTTTCCGCAGTT 1137 |||||||||||| | |||| || ||||||| || | | | | ||||| || | Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAATATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGAT 1741886 Query 1138 TGTGGTTGAAACGTATCTGCAG----ATGATAAATCCTTGTCGTTGTGTATAGGTGGTCC 1193 ||| ||||||| ||||||| | ||||| || | || ||||| | || ||| Sbjct 1741887 TGTAGTTGAAATGTATCTGGATTTCTATGATG--TCGTGGTTGTTGTTAAATTGTC-TCC 1741943 Query 1194 TCTACGTTGGT--TATCTTGAAATAGAGGGGATTTGCAATCTCCCAAATAAAGGCGCCAT 1251 ||| || || ||||||||||||||||| ||||| | |||||| | | | |||| Sbjct 1741944 TCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCAT 1742003 Query 1252 TCTCTGCT-TGATGCACAGTGATGTGTTCCCCGGTGCGTGAATCCATTGTTTCTACAGTT 1310 | | ||| ||| || ||||| |||||||||||| | ||||||| ||| |||||||| Sbjct 1742004 TGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTT 1742061 Query 1311 GAGGTGGATGTAGATGGA-GCAGCCACAGTCTAGGTCTATGCGTTTACGCCGAATTGC 1367 | ||| ||| || | ||| ||||||| || || ||||| || || |||||| Sbjct 1742062 AATGTGTTGGTA-ATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTAATTGC 1742118 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1479 GGAACTCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCACGATTGATGGGATTCCTC 1538 |||| |||||||| || || || | |||||| || | |||||||||| ||| | | Sbjct 599817 GGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACAC 599758 Query 1539 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAA 1598 |||||||||||| | || || || || || | |||||||| || ||| ||||| Sbjct 599757 ATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAA 599698 Query 1599 TTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTAT 1658 | | |||||| | || ||||| |||| ||| |||| ||||||||||| | |||| Sbjct 599697 TAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8095705983640