Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025680.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq519 152 9e-34 seq1694 100 5e-18 seq3069 95.1 2e-16 >seq519 Length=3254320 Score = 152 bits (168), Expect = 9e-34 Identities = 344/507 (68%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 2093 AAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCC 2152 ||||| | | | ||||| ||||| ||||||||| |||||| | | | ||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2153 TTCTCTTTTAATATATTGAGGGCCTCGGATTTACTG-CCT-GAATTGAGTGCTTCGGCAT 2210 |||||||||| ||| | | | | | || | || ||| ||||| | |||| | | Sbjct 1743058 TTCTCTTTTATTATTTGTAATG--TTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGT 1743115 Query 2211 ATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTC 2270 || | || | ||||| || ||| ||||| ||||| ||||| ||||| ||| | Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2271 CAAAATCAATGAAGTCTCCGTCTTTTTCCACGTAGGTCTTGACATCTG---TTGAGCTCT 2327 | |||| | | ||||||| || ||||| | ||| | || |||| | |||| | Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGAT---T 1743232 Query 2328 TAGCTGCCTGAATGTTTGGATGGAAATGTGCTGACCTGTTTGGG-GATACCAGGTCGAAG 2386 ||| |||| ||| ||||||| || | ||||| ||| |||| | ||| || Sbjct 1743233 TAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAA 1743291 Query 2387 AACCGTTGGTTCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGT 2446 || | ||| || | || | |||| ||| ||| |||||||| ||||| | ||||||| Sbjct 1743292 AATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2447 TCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCT 2506 ||||| || ||| | |||| |||| ||| | ||| ||||| |||||| ||| | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG 1743411 Query 2507 ATGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGATATGTTAG 2565 | | |||| | || ||| || || ||||| | ||| ||||| |||||| | || || Sbjct 1743412 AGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAG 1743470 Query 2566 GAAATAATTCTTGGCATATATTTTAAA 2592 ||||| ||| ||| || |||| |||| Sbjct 1743471 GAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 122 bits (134), Expect = 2e-24 Identities = 331/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 2105 AAATTTGAATTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAAT 2164 ||||| ||||| ||||||||| |||||| ||| | ||||||| | |||||||||| | Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2165 ATATTGAGGGCCTCGGAT-TTACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGC 2223 || | | || | | || ||| | |||| | ||||| || ||| | || | Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATCTGCAAC 1748943 Query 2224 AGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAA 2283 || || || ||| ||| | ||||| ||||| ||||| ||| | | |||| | | Sbjct 1748944 TATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATA 1749003 Query 2284 GTCTCCGTCTTTTTCCACGTAGGTCTTGAC--ATCT---GTTGAGCTCTTAGCTGCCTGA 2338 |||||| || ||||| | ||| | || || ||| ||||| ||||| ||| Sbjct 1749004 GTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGAT---TTAGCATATTGA 1749060 Query 2339 ATGTTTGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTC 2398 | ||||||||||| || | || || ||| | | |||||| |||| ||| || Sbjct 1749061 ACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTG 1749119 Query 2399 TTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCG 2458 | || | |||| ||| ||| | || | ||||| | ||||||||||| | || | Sbjct 1749120 GTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-G 1749177 Query 2459 TGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTATGTTTTTTAAT 2518 || | ||||||||| ||||| ||| |||| |||||| ||| | | |||||| | Sbjct 1749178 TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA 1749237 Query 2519 TGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGATATGTTAGGAAATAATTCTT 2577 || ||| | || ||||| | ||| |||| |||||| | || || |||||||| || Sbjct 1749238 TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTT 1749296 Query 2578 GGCATATATTTTAAA 2592 | || |||| |||| Sbjct 1749297 GCTATTTATTCTAAA 1749311 Score = 82.4 bits (90), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 1302 TTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAAT 1361 ||||||| |||| |||||| |||||| || |||||||||||||| | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1362 GGCCTGTGGCTGTGTTC-TGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAA 1420 | || ||| ||| ||||||||||||||| |||| ||| || ||||| | | Sbjct 1741937 TGTCT-CCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1421 AACGCCATTCTCTGC-CTGAGGAGCAATGATGAGTTCCCCTGTGCGTGAATCCATGATTA 1479 || ||||| | ||| |||| | | ||| ||||||| ||| | ||||||| || Sbjct 1741996 TACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1480 CTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTA 1519 || ||||| | ||| |||| ||| ||| ||||||| || Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATA 1742093 >seq1694 Length=789422 Score = 100 bits (110), Expect = 5e-18 Identities = 251/377 (67%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 2227 TTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTC 2286 ||||| || || ||||| ||||| ||||||||||| ||| | || |||| | | |||| Sbjct 599270 TTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTC 599211 Query 2287 TCCGTCTTTTTCCACGTAGGTCTTGACATCTGTTGA-GCT--CTTAGCTGCCTGAATGTT 2343 ||| || ||||| | ||| | || |||| | || ||| || | | ||||| | Sbjct 599210 TCCCTCCTTTTCAATGTATGATTTAACAT---TAGAGGCTGATTTTGTAGACTGAACACT 599154 Query 2344 TGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACA 2403 ||||||||| || | ||||| ||| | | |||||| |||| ||| | | || Sbjct 599153 TGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCA 599095 Query 2404 TTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAA 2463 | |||| ||| ||||| || ||| || || | |||||||||||| || || || Sbjct 599094 ACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAA 599035 Query 2464 TTCTCTGCAAACTTTGATGTATTT----TTTAT----TTGTTGGGGTTTCTATGTTTTTT 2515 ||||| ||| ||| | ||| |||| ||||| | |||||||| ||||| Sbjct 599034 TTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGT-------TTTTTG 598982 Query 2516 AATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTC 2575 || || ||| | || ||||| ||||||| || | || | || ||||||| || Sbjct 598981 AAATGATGAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTT 598922 Query 2576 TTGGCATATATTTTAAA 2592 | || |||| |||| Sbjct 598921 AAGCTATTTATTCTAAA 598905 Score = 86.0 bits (94), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 2380 GTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAG 2439 |||||| ||| ||| || | |||| | |||| ||| ||| |||| ||| || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2440 ATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGG 2499 |||||||||||| | ||| | ||||||||| || | ||| |||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2500 GGTTTCTATGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGAT 2558 | | |||||| | || ||| | || ||||| ||||||||||| |||||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA- 588071 Query 2559 ATGTTAGGAAATAATTCTTGGCATATATTTTAAA 2592 | || |||||||| || | | || |||| |||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 >seq3069 Length=10854949 Score = 95.1 bits (104), Expect = 2e-16 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 1302 TTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAAT 1361 ||||||| |||| ||||||| |||||| || ||||||||||||| | |||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1362 GG---CCTGTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATA 1418 || ||| || |||| ||||| |||||||||||||||||| || || || ||| Sbjct 3754468 GGTCTCCTCTG---GTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1419 AAAACGCCATTCTCTGC-CTGAGGAGCAATGATGAGTTCCCCTGTGCGTGAATCCATGAT 1477 | ||| |||| | ||| || || | | ||| || ||| ||||| ||| ||| | Sbjct 3754525 TATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGT 3754583 Query 1478 TACTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTACACGTTTACGCC 1537 | |||| || | || ||||||||| ||| ||||| | || | ||||| || | || Sbjct 3754584 TCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTTCTCC 3754643 Query 1538 TTATTG 1543 | |||| Sbjct 3754644 TAATTG 3754649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732482857452