Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025681.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq1694 89.7 9e-15 seq519 89.7 9e-15 seq1129 87.8 3e-14 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 2390 GTCGAAGAATCTTTGATTCGTGCACTGGTAATTCCCCTCGAACTGGAGAAGCACATGGAG 2449 |||||| || ||||||| ||||| | | | ||||| |||||||||||| || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2450 ATGAGGTTGCCCATCTTCATGCAGTTCTCTGCATATCTTAATATATTTTTTATTTGTAGG 2509 ||| |||| ||| |||||||||||||| | | || |||| ||||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2510 GGTTTGGAGTTGAAGAAGCTGCTGAAGAGTTTCTTCTTTGGATAGAGAACAT-TGGGGAT 2568 | ||| | || || |||||| || ||||| || ||||||||| | |||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA- 588071 Query 2569 AAGTGAGAAAATAGTTTT 2586 ||||||| |||||||||| Sbjct 588070 AAGTGAGGAAATAGTTTT 588053 >seq519 Length=3254320 Score = 89.7 bits (98), Expect = 9e-15 Identities = 245/364 (67%), Gaps = 21/364 (6%) Strand=Plus/Plus Query 2238 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGACCTGGAATTCTCCCCATTCCAAAGTGTCT 2297 |||| | ||| ||||||||||| || || | || || || | || || | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2298 CCATCCTTATCGACGTAGGACTTGACGTCGGAGCTGGATTTCGCTCTCTGAATGTTTGGG 2357 || ||||| |||| ||| || || || | ||| | ||||| | |||| ||| | Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2358 TGGAAAT-----GTGCTGACCGGGTTGGAGAGACCAAGTCGAAGAATCTTTGATTCGTGC 2412 ||||| | || ||| |||| || | | ||| || |||| |||||| |||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGT--GATA---TATGTCAAAAAATCATTGATTGGTGC 1743307 Query 2413 ACTGGTAATTCCCCTCGAACTGGAGAAGCACATGGAGATGAGGTTGCCCATCTTCATGCA 2472 | | | || || ||| |||| ||| ||||| | ||| |||| ||| | || | Sbjct 1743308 AACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTA 1743367 Query 2473 GTTCTCTGCATA-TCTTAATATATTTTTTATTTGTAGGG--GTT-TGGAGTTGAAGAAGC 2528 ||||| |||| | |||| || ||||| |||||||||| ||| || || ||| Sbjct 1743368 GTTCTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGA--- 1743423 Query 2529 TGCTGAAGAGTTTCTTCTTTGGATAGAGAACAT-TGGGGATAAGTGAGAAAATAGTTTTT 2587 || ||||||| || ||||| | || |||||| | |||| ||||||| |||| | |||| Sbjct 1743424 TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAAT-GATTTT 1743481 Query 2588 TGCT 2591 |||| Sbjct 1743482 TGCT 1743485 >seq1129 Length=1508174 Score = 87.8 bits (96), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 2390 GTCGAAGAATCTTTGATTCGTGCACTGGTAATTCCCCTCGAACTGGAGAAGCACATGGAG 2449 |||||| || |||||||| ||||| | | ||||| |||||||||||| || || | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2450 ATGAGGTTGCCCATC---TTCATGC--AGTTCTCTGCATATCTTAATATATTTTTTATTT 2504 ||| |||| ||| | || ||| |||| | |||| || | || | ||| |||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2505 GTAGGGGTTTGGAGTTGAAGAAGCTGCTGAAGAGTTTCTTCTTTGGATAGAGAACAT-TG 2563 |||||| | ||| | | || || ||||||| || ||||| || ||||||||| | Sbjct 678508 GTAGGGTAGTTGAGGTTTTG-AGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2564 GGGATAAGTGAGAAAATAGTTTTT 2587 | || || |||| ||||||||||| Sbjct 678449 GAGA-AACTGAGGAAATAGTTTTT 678427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8790071376390