Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025725.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq3069 107 3e-20 seq2957 91.5 3e-15 seq1129 80.6 5e-12 seq1694 78.8 2e-11 >seq3069 Length=10854949 Score = 107 bits (118), Expect = 3e-20 Identities = 187/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 1242 TAAGGTCGTCCAGATTTTGAAATCCATCCA-GCATTGATGTAGTCCCAACGCTTTCCTCA 1300 ||| ||||||||||| |||||| ||||| || || || | | ||| |||||||| | Sbjct 3754356 TAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTC-TGAAATTTCAAGGCTTTCCTGA 3754414 Query 1301 GGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCGTGTTCCATTAGGAACGGCCGGC 1360 ||||| |||||| ||||||||| ||| |||||||| || | || || | | Sbjct 3754415 GGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCC 3754474 Query 1361 TGCTGTGGTC-TATGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGACGCCA 1419 | ||| ||| | | | ||||||||| ||||||||||| || || || |||| ||| || Sbjct 3754475 T-CTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCA 3754533 Query 1420 TTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTT 1479 || | || ||| | ||||| || ||| ||||| ||| ||| ||| | ||| || Sbjct 3754534 TTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATT 3754593 Query 1480 GATGTGCACGTAGTACGAGCACCCGCA 1506 |||| |||||| | ||| || || Sbjct 3754594 AATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 1288 AACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCGTGTTCCATT 1347 || |||||| | ||||||| ||||||| ||||||||| | ||| |||| | ||| | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1348 AGGAACGGCCGGCTGCTGTGGTCT-ATG--ATCTTGAAATAGAGGGGATTTGGAACCTCC 1404 ||| | | | || |||| | ||| |||||||||||| || ||||||| || ||| Sbjct 1238809 TTGAATGATC---TCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCC 1238865 Query 1405 CAGGTATAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCC 1464 ||||||| || |||| | |||||| ||| ||| | | | | ||||| ||||| Sbjct 1238866 TAGGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCC 1238925 Query 1465 ATGGTTGTGGCAGTTGATGTGCACGTAGTA 1494 || ||| |||| ||||||| ||| || Sbjct 1238926 ATTGTTCATATAGTTAATGTGCAAGTAATA 1238955 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1242 TAAGGTCGTCCAGATTTTGAAATCCATCCA-GCATTGATGTAGTCCCAACGCTTTCCTCA 1300 ||| ||||||||||| || ||| ||| || || || || | | | | |||||| | Sbjct 693826 TAATGTCGTCCAGATCTTCAAAAACATTCATGCCTT-CTGAAATTGTAGGGTTTTCCTAA 693768 Query 1301 GGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCGTGTTCCATTAGGAACGGCCGGC 1360 ||||| ||||||| ||||||||| ||| |||| ||| | |||||| | | Sbjct 693767 AGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAACGGTCTCC 693708 Query 1361 TGCTGTGGTCTATGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGACGCCAT 1420 | ||| | | | |||||| ||||| ||||| || ||| ||||| ||||| ||||||| Sbjct 693707 TCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATATACGCCAT 693649 Query 1421 TCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTG 1480 | | || || ||| ||| || | ||| || || ||||||| ||| | |||| Sbjct 693648 TATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTTCATGTAGTTA 693590 Query 1481 ATGTG 1485 ||||| Sbjct 693589 ATGTG 693585 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 141/206 (68%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1303 TTGTGGTTGAACCGTATCTGGACGGTTATTATGTCGTGTTCCATTAGGAACGGCCGGCTG 1362 |||| ||||||| |||| |||| ||| |||||||| | | ||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1363 CTGTGGTCTATGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGACGCCATTC 1422 ||| | | |||||||||||||| ||||||| || ||||| | ||| |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1423 ATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGAT 1482 | | |||| |||||| ||||||| |||| ||||||| ||| ||| || || Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1483 GTGCACGTAGTACGAGCACCCGCAAT 1508 || ||| || | ||| || |||| Sbjct 596461 ATGTTGGTAATATGTGCAACCACAAT 596436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8642886111388