Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025964.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3069 123 4e-25 seq2957 120 5e-24 seq519 118 2e-23 seq1694 102 1e-18 >seq3069 Length=10854949 Score = 123 bits (136), Expect = 4e-25 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 1301 TTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGT 1360 |||||||||||| ||||| || | | ||| | ||||||||||||| |||| | | Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1361 GGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATAC 1420 || || || |||||| ||||| |||||| || ||||||||| | | || || ||||| Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1421 ACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGT 1479 ||| |||| | ||| | ||| | ||||| || ||| ||||| ||| ||| ||| | Sbjct 3754528 ACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCT 3754586 Query 1480 GGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTT 1531 ||| || |||| | |||||||| ||| ||||| | || || ||| | ||| Sbjct 3754587 TGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTT 3754638 >seq2957 Length=4215098 Score = 120 bits (132), Expect = 5e-24 Identities = 166/226 (73%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1301 TTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGT 1360 ||| ||||||||| |||||||| | | ||||| ||||||| | | || |||||| | Sbjct 1238755 TTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAAT 1238814 Query 1361 GGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATAC 1420 | || || |||||| |||||||||||| ||| || ||||| | | ||| || |||| Sbjct 1238815 GATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATAT 1238874 Query 1421 ACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCC-CCTGTGCGTGAATCCATGGTTG 1478 || |||| | ||| ||||| ||| ||| || |||| | ||||| ||||||| ||| Sbjct 1238875 ACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCATTGTTC 1238932 Query 1479 TGGCAGTTGATGTGTACGTAGTAT-GAGCACCCACAGTTTAGATCA 1523 |||| ||||| | ||| ||| | ||| ||||| ||||||||| Sbjct 1238933 ATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 166/227 (73%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 1301 TTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGT 1360 |||||||| |||| ||||| || | | ||| | |||||||||||||| |||| | | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1361 GGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCA--GATAT 1418 | || || |||| | |||||||||||| ||||||| |||| | | ||||| ||||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1419 ACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTT 1477 ||| ||||| | ||| ||||| ||||| |||||| ||| | ||||||| ||| Sbjct 1741997 ACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1478 GTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAA 1524 ||||| |||||| ||| ||| ||| ||||||| || ||||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 98.7 bits (108), Expect = 2e-17 Identities = 262/395 (66%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 2092 AAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAA-TCTTTAGGGAG 2150 ||||| | | | ||||| | || |||||||||||||| | | | ||| ||||| ||| Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTT-GGGTC 1743056 Query 2151 TTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGAACCGGCATTTAACGCCTCTGCTGC 2210 || || | |||||| ||| | || || || | | ||| | ||| | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAG-TGT 1743115 Query 2211 A-ACATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTCAC 2269 | ||||| | || | || | || ||| | ||||||||||||||| || ||||| ||| Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2270 CCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAG 2329 | || || | ||| || || ||||| |||||||| || || |||| |||| | || |||| Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAG 1743235 Query 2330 CTCCCTGGAAGTTTGGGTGGAATTGAGTTGAGGTATAGGGGTGAGTGACATCAAAATGTC 2389 || | ||| | ||||||||| | | | | |||||| | |||||| || Sbjct 1743236 AAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATC 1743295 Query 2390 TGGGGTTTCTGAACTGGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACC 2449 | || || | | |||||||| |||| ||||| || |||| | ||| | || Sbjct 1743296 ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCC 1743355 Query 2450 CATCTTGGTGTTTTTCTTGTGACACTCTGATAAAT 2484 | | |||| ||||| ||||||| || ||| Sbjct 1743356 CGTTGCTGTGTAGTTCTTTGCACACTCTTATGAAT 1743390 Score = 95.1 bits (104), Expect = 2e-16 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 2104 AAATTACATTTTAAATTATGATATTGAAAAATAAAA-TCTTTAGGGAGTTTTTCCCTAAT 2162 |||||| | || |||||||||||||| | ||| ||| ||||| ||| ||| || | || Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTT-GGGTCTTTCTCTTTTAT 1748883 Query 2163 TATTGCTAAAGCTGCGTCAGCAGAACCGGCATTTAACGCCTCTGCTGCAACATCATTAGC 2222 |||| ||| ||||| || | | ||| | ||| || || ||||| | | Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAATTAATCGCTTCAGCGTATACATCTGCAAC 1748943 Query 2223 TGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTA 2282 | | | | || ||| | | ||||||||||||| || ||||| ||| |||| || | || Sbjct 1748944 TATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATA 1749003 Query 2283 ATCACCGTCCTTCTCGATGTAGGACTTGA--CATCAGAGCTGGACTTAGCTCCCTGGAAG 2340 || || ||||| || ||||| || || | ||||| || | || ||||| || | Sbjct 1749004 GTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACA 1749063 Query 2341 TTTGGGTGGAATTGA 2355 ||||| ||||||||| Sbjct 1749064 TTTGGATGGAATTGA 1749078 >seq1694 Length=789422 Score = 102 bits (112), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 1310 TTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGTGGCCTGCTG 1369 |||| |||||||| | ||| | || ||||||||||| |||||| ||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1370 TGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATACACGCCATTC 1429 | |||| |||||||||||| ||||| ||||| | | ||||| ||| |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1430 TCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGA 1488 | ||| |||| |||||| |||||| |||| ||||||| ||| ||| || | Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1489 TGTGTACGTAGTATGAGCACCCACAGTTTAGATCA 1523 | ||| ||| |||| ||| ||||| | || |||| Sbjct 596462 TATGTTGGTAATATGTGCAACCACAATATATATCA 596428 Score = 91.5 bits (100), Expect = 3e-15 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1301 TTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGT 1360 ||||||| || || ||||||| | | ||| | ||||||||| |||| |||||| | Sbjct 600229 TTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTGAAT 600170 Query 1361 GGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATAC 1420 || || || |||||| |||||||||||| |||||||||||| | | || || |||| Sbjct 600169 GGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTATAT 600110 Query 1421 ACGCCATT 1428 ||| |||| Sbjct 600109 ACGTCATT 600102 Score = 87.8 bits (96), Expect = 3e-14 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 2118 ATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGC 2177 ||||||||||| | | || ||| ||| ||| ||| || | |||||| ||| | ||| Sbjct 599377 ATTATGATATT-ATAGATGAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATGTTGC 599319 Query 2178 GTCAGCAGAACCGGCATTTAACGCCTCTGCTGCA-ACATCATTAGCTGTCTGTTGACCTC 2236 || || | | ||| | | | || | || | ||| | | |||| || | || || Sbjct 599318 ATCTCTGGACCTAGAATTAATCACTTCAG-TGTATACACCTGCAACTGTTTGCTTACATC 599260 Query 2237 CTCGAGCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCT 2296 | |||||||||||||||||| ||||| |||||||| || | ||| || || ||||| | Sbjct 599259 TCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTT 599200 Query 2297 CGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGA 2355 | ||||| || || |||| |||| || || | ||| | |||| ||||||||| Sbjct 599199 CAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGA 599141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784