Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_026253.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq1129 136 7e-29 seq519 123 4e-25 seq1694 114 2e-22 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 7e-29 Identities = 249/356 (70%), Gaps = 18/356 (5%) Strand=Plus/Minus Query 1566 TTTTCCTCTTTTTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACG 1625 ||||||||||| || |||||||||||||| | || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1626 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTATTTACAATTTGACTGCCAG 1685 |||||||||| ||||||||| |||| || || || || || ||||| ||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1686 TCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTTAGCTTTAGGTATTGGGGACTGACG 1745 | ||||| | |||||||||| || ||| ||||||| | ||||| ||| |||| | || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1746 TCATCGATGACGT--TATGCTCCA-CATCGTTGGAGTA--GACCCG--GGAATTGAAGTC 1798 ||||| ||||| | |||| | || ||| | |||| || || | | ||| |||| Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTG-TGGAATACTGATTTGTTGAAATCTAAGT- 679179 Query 1799 CAGATGGCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCAGT 1858 ||||||| | | ||||||||| || | | | || ||| | | || ||||| | Sbjct 679178 --GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT 679121 Query 1859 T---CTTGAACCACCTTCAACTATCAAACTTATGGGCCTCTCTGGCCGCGCAGCGG 1911 | |||| ||||||| || | |||| | || || ||||||| |||| ||| Sbjct 679120 TCGACTTG---GGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 1527 AATTGAGCATTTTTTAATGTCCAGGCTCTCAGTGATGCGTTTTCCTCTTTTTCGAGGAAA 1586 |||| |||||||| || |||| | || | | | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1587 TCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1646 |||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1647 ATTTGAACAGGCTTGCCGTATTTACAATTTGACTGCCAGTCCTTTTGGGCCCCAATCAAT 1706 |||| ||| | || | | || ||||| ||||| || ||||| ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1707 TCCTTCCAATG----CTTTAGCTTTAGGTATTGGGGACTGACGTCATCGATGACGTTAT 1761 || |||||||| || | ||||| |||| |||| || ||||| ||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 >seq1694 Length=789422 Score = 114 bits (126), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 1566 TTTTCCTCTTTTTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACG 1625 |||||||||| || ||||||||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1626 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTATTTACAATTTGACTGCCAG 1685 ||||||| ||| | | ||||||||||||| | || || || || |||| ||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1686 TCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTTAGCTTTAGGT-ATTGGGGACTGAC 1744 || ||||| ||||||| ||||| ||| | ||||| | ||||| || | |||| ||| | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-C 599655 Query 1745 GTCATCGATGACGTTAT 1761 ||||| ||| | |||| Sbjct 599654 ATCATCAATGTCATTAT 599638 Score = 77.0 bits (84), Expect = 5e-11 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1566 TTTTCCTCTTTTTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACG 1625 ||||||||||| || | ||||||| | || || || || | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1626 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTATTTACAATT 1675 ||||||||||| || |||||||||| ||| || || || || || ||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8406094711076