Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_026761.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq1694 87.8 3e-14 seq1129 78.8 2e-11 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 250/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 2226 TCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTT 2285 ||| || || ||||||||||| || ||||| || | || || | ||| || ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2286 GTCGATGTAGGCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2345 |||||||| | || |||| ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2346 TGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTCC 2404 | ||| | ||| |||| | ||| || |||| ||||| |||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2405 CCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATCTTCGTGAAGCTCTCTGCAGA 2464 | ||| ||||| || || |||| ||| |||||||| | ||| || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2465 -TCTTGATGTATTTTTTGGATGTTGGGGTTTCTAAGTTTTTTAATTGGGAAAGTGCTTCC 2523 |||| ||| ||||| ||| ||| | | | |||| | || ||| || || Sbjct 1743380 CTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2524 TCTTTTGTTAGAGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAA 2582 |||||||| || || || ||||||| ||||||| |||| ||||||| |||||||||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 123 bits (136), Expect = 4e-25 Identities = 242/350 (69%), Gaps = 7/350 (2%) Strand=Plus/Plus Query 2236 GATCTTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTTGTCGATGTAG 2295 ||||||||||| || ||||| || |||| || | | ||| || ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2296 GCCTTGAC--ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2353 | || || ||| || |||||||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2354 TGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTCCCCTCGAACT 2413 | || ||| | | |||||| || | ||||| |||| | ||||||| ||||| Sbjct 1749086 TA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2414 GGATGAGCACGTGCAGATGAGGTTCCCCATCTTCGTGAAGCTCTCTGCAGATCTTGATGT 2473 || || || |||| ||| ||||||| | | ||| || |||||||| | || ||| Sbjct 1749145 AGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2474 ATTTTTTGGATGTTGGGGTTTCTAAGTTTTTTAATTGGGAAAGTGCTTCCTCTTTTGTTA 2533 |||| ||| ||| | | |||||| | || ||| | || |||||||| | Sbjct 1749203 ATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGA 1749262 Query 2534 GAGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAA 2582 | | || ||||||| |||||||||||||||||||| |||||||||||| Sbjct 1749263 GTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 18/222 (8%) Strand=Plus/Minus Query 2370 GTCGAAGAATCTCTGATTCTTGCACTGGTATTTCCCCTCGAACTGGATGAGCACGTGCAG 2429 |||||| || | ||||| |||| | | ||||||| |||||||| || ||||||| Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2430 ATGAGGTTCCCCATCTTCGTGAAGCTCTCTGCAGATCTTGATGTATTT----TTTG---G 2482 ||| |||||||| ||| || |||||||| | | ||| |||| |||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2483 AT-GTTGGGGTTTCTAAGTTTTTTAATTGGGAAAGTGCTTCCTCTTTTGTTAGAGAGCA- 2540 || |||| ||||| | || | | || ||| | || ||||||| ||||| || Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAA----GAA----CATCATCTTTTGAGAGAGAACAT 588078 Query 2541 CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAA 2582 ||||||| ||||||| ||||| |||| | |||||||||||| Sbjct 588077 CTTGGGA-AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 Score = 80.6 bits (88), Expect = 5e-12 Identities = 252/382 (66%), Gaps = 25/382 (7%) Strand=Plus/Minus Query 2230 CTTGCTGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTTGTCG 2289 || || |||||||||||||| ||||| || ||||| || | ||| || ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2290 ATGTAGGCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2349 ||||| | || |||| ||| |||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2350 GACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTCCCCTCG 2409 | ||| | ||| | | |||||| || || |||| | || | |||| || | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2410 AACTGGATGAGCACGTGCAGATGAGGTTCCCCATCTTCGTGAAGCTCTCTGCAGA-TCTT 2468 || | || || ||||| | ||| |||||||| | || | |||| ||| | |||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2469 GATGTATTT----TTT----GGATGTTGGGGTTTCTAAGTTTTTTAATTGGGAAAGTGCT 2520 ||| |||| ||| | |||||||| ||||| || || ||| | Sbjct 599018 -ATGAATTTGAGATTTATAGCGTAGTTGGGGT-------TTTTTGAAATGATGAAGAACA 598967 Query 2521 TCCTCTTTTGTTAGAGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCT 2579 || |||||| |||||||| ||||| | ||||| | ||||| ||| | ||||||||| Sbjct 598966 TCATCTTTTAAGAGAGAGCATCTTGGTA-AAGTGTGGAAATAGTTTAAGCTATTTATTCT 598908 Query 2580 AAATGGTCTTG-TAGGAACCAT 2600 ||| |||| | |||||||| Sbjct 598907 AAA----CTTGTTGGGAACCAT 598890 >seq1129 Length=1508174 Score = 78.8 bits (86), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 2370 GTCGAAGAATCTCTGATTCTTGCACTGGTATTTCCCCTCGAACTGGATGAGCACGTGCAG 2429 |||||| || || ||||| |||| | ||||||| |||||||| || ||||||| Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2430 ATGAGGTTCCCCATCT-----TCGTGAAGCTCTCTGCAGATCTTGATGTATTTTTTGGAT 2484 ||| |||||||| | | | | || | | |||| || | ||| | ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTA--GAT 678511 Query 2485 GT-TGGGGTTTCTAAGTTTTTTAATTGGGAAAGTGCTTCCTCTTTTGTTAGAGAGCA-CT 2542 | | |||| | || |||| | || ||| || || ||||||| ||||| || || Sbjct 678510 TTGTAGGGTAGTTGAGGTTTTGAGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCT 678451 Query 2543 TGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAAT 2583 || || || |||| ||||| |||||| ||||||||||||| Sbjct 678450 TGAGA-AACTGAGGAAATAGTTTTTGCTATTTATTCTAAAT 678411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936