Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_026763.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq519 98.7 2e-17 seq1129 89.7 9e-15 seq3069 84.2 4e-13 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 234/351 (67%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 2230 ccTCTTGCTGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTG 2289 || || || |||| ||| || || || || || | || || | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2290 TTGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2349 | |||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2350 GCTGACCTGTTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCC 2408 | ||||| ||| |||| | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2409 TTCGAACTGTATAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGAT 2468 | ||| || ||||| || || | ||| || | ||| || || || ||| || | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2469 TTTGATATATTTTTTATTTGTGGGGGTATTGAGGTTTTGTAATTGGGAAAGTGCTTCTTC 2528 | | || ||||| |||||| ||| |||||| ||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2529 TTTTGAAAGAGAGCATTCTGGATAAGTGAGGAAATAATTTTTGGCTTTTAT 2579 ||||| || || ||| ||| |||||||||||| ||||||| ||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 227/343 (66%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 2239 GATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTGTTGATGTAG 2298 |||| ||| || || || || || |||| || | | |||||| ||||| | ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2299 GACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2356 || || || || || | |||||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2357 TGTTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACT 2416 | || ||| | | |||||| || | | ||| |||||| | |||||||| ||||| Sbjct 1749086 TATTAGGGTTTGT-ATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2417 GTATAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGATTTTGATAT 2476 | | || || | ||| || ||||| || || || |||| || | ||| || Sbjct 1749145 AGAGATT-ACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2477 ATTTTTTATTTGTGGGGGTATTGAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGAAA 2536 |||| |||||| ||| |||||||||| | || ||| | || ||||||| | Sbjct 1749203 ATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGA 1749262 Query 2537 GAGAGCATTCTGGATAAGTGAGGAAATAATTTTTGGCTTTTAT 2579 | | ||| ||| ||||||| |||||||||||| ||||| Sbjct 1749263 GTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 >seq1129 Length=1508174 Score = 89.7 bits (98), Expect = 9e-15 Identities = 208/311 (67%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 1687 CCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCGTAT 1746 |||||||| || || ||||||| |||| ||||||||| ||| |||||||| || Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1747 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTCAGAT-- 1804 || || |||||||| || |||| |||| || || ||||| |||| |||| | Sbjct 679313 TTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1805 -----AGTGGGGGTCGACGTCATCTATGACGTTATACCATGCGTCGTTGCTGTAGATCTT 1859 |||||| || || ||||||||||| ||||| ||| || ||| | | | Sbjct 679254 AAGTAAGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGA 679196 Query 1860 TGGGCTTAGATCTA---GATGTCCGCACAAATAATTATGTGGGCCTAATGATCGAGCCCA 1916 | | | | ||||| |||| ||| | |||||||| || | | ||| || ||| | Sbjct 679195 TTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAA 679136 Query 1917 CATAGTTTTCCCTGTTCTACTCGCACCCTCTATCACTATACTCACGGGTCTCCAGGGCCG 1976 ||||||| ||| ||| ||| | || || || | |||||| ||||| |||| Sbjct 679135 AGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCA 679076 Query 1977 CGCAGCGGCAT 1987 |||| ||| || Sbjct 679075 CGCATCGGTAT 679065 >seq3069 Length=10854949 Score = 84.2 bits (92), Expect = 4e-13 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1288 CAACGCTTTCCTCAGGTTGTGATTGAACTGGACCTGGACTTCTATGATGTCGTGGTTCAT 1347 ||| |||||||| |||||| ||||| || | ||||| |||||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1348 CAGAAATGGCCTCTCGTGGTGCTGGGTCACTTTGAAATATAGGGGA-TTGTTGATTGTCC 1406 |||||| ||| ||||| || | ||||||||||||||| ||| | || | | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT-C 3754519 Query 1407 AGATATATACGCCATTCTCTGC-TTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCC 1465 | ||||||||| |||| | ||| | || | ||||| || ||| ||||| ||| | Sbjct 3754520 AAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1466 ATATGAT-GCGCAATTAATTCCAATATAATATGAGCATCCACA 1507 || || | ||||||||| | || |||| ||| ||||| Sbjct 3754579 AT-TGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649285878964