Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027040.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3069 122 2e-24 seq2957 109 1e-20 seq519 107 3e-20 seq1694 104 4e-19 seq1129 77.0 6e-11 >seq3069 Length=10854949 Score = 122 bits (134), Expect = 2e-24 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1285 CAACGCTTTCCTCAGGTTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGT 1344 ||| |||||||| |||||| |||||||||||| |||||| |||||||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1345 GTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTC-C 1403 ||| ||||||||| ||||| |||| ||||||||| ||||||||| | | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTT-GGTACTTCTC 3754519 Query 1404 AGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAACTCCCCGGTGCGTAAATCCA 1463 | |||| ||| || | | ||| | || | |||||| | ||| ||||| |||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1464 TGATTTGCGCAGTCTATGCCGAAGTAGTATGAGCACCCGCA 1504 | || ||| | ||| | |||||||| ||| || || Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq2957 Length=4215098 Score = 109 bits (120), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1286 AACGCTTTCCTCAGGTTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGTG 1345 || |||||| | ||||||| |||||| ||||| ||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1346 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCC-A 1404 ||||||| |||| ||||| ||||||||||||||| || ||||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTT-GGTACTTCCTA 1238867 Query 1405 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAACTCCCCGGTGCGTAAATCCAT 1464 |||||| || || | | ||| |||| ||| |||| | | ||||| |||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1465 GATTTGCGCAGTCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1514 || ||| ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1291 TTTCCTCAGGTTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1350 |||||| || |||| |||||| ||||| ||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1351 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAGGTATA 1410 | ||||| |||| ||||||||||||||||||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1411 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAACTCCCCGGTGCGTAAATCCAT 1464 || ||| | | ||| |||| |||||| ||||||||| | |||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 89.7 bits (98), Expect = 9e-15 Identities = 229/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 2233 GCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATA 2292 ||||||| ||| || || || || || | || || | | |||||| ||||| ||||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2293 TAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2352 || || || || | ||| | ||||||| |||| || ||||||| || | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2353 CGGGTTGGG-GAGACCAGGTCGAAGAATCTGTTATTCTGGCACTTGTATTTCCCTTCGAA 2411 | | | ||| || | | ||| || |||| | ||| ||| | |||| ||| ||| Sbjct 1743268 CTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2412 CTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGCGATTCTCTGCAGATTTTTAT 2471 |||||||| || || | ||| || ||| | ||| |||| |||| | | |||| Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTAT 1743386 Query 2472 GTATTTTTTATTAGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGCTTCCTCTTTGGT 2531 | ||||| ||| || ||| ||| ||| ||| || || ||| || || ||||| || Sbjct 1743387 GAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGT 1743446 Query 2532 TAGAGAGCACTGTGGATAAGTGAGGAAATAGTTTTTGGCATATATT 2577 || || || ||| |||||||||||| |||||| || |||| Sbjct 1743447 GAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 >seq1694 Length=789422 Score = 104 bits (114), Expect = 4e-19 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1289 GCTTTCCTCAGGTTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGTGTTG 1348 |||||||| | || || |||||| | ||| | |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1349 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTT 1393 ||||||||| ||||| |||||||||||||||||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 Score = 102 bits (112), Expect = 1e-18 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1301 TTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCG 1360 |||| |||||| ||||| |||||| ||| |||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1361 TGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAGGTATACACGCCACTC 1420 | ||| ||||||||||||||||| ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1421 TCGCATTGAGTTGCAGTGAGTAACTCCCCGGTGCGTAAATCCAT 1464 | ||| ||| ||||||| ||||| |||| |||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 78.8 bits (86), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 2370 GTCGAAGAATCTGTTATTCTGGCACTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAG 2429 |||||| || | | ||| ||| | | |||||||| |||||||| ||| ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2430 ATGAGGGCTCCCATCTTC-GTGCGATTCTCTGCAGATTTTTATGTATTTTTTATTAGTTG 2488 ||| || |||| | | |||| ||||||||| | ||||| |||| ||| || Sbjct 588189 ATGTGGT-TCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAA 588131 Query 2489 GGGTGTTTAGGTTTTGGATTTGGGAAAGTGCTTCCTCTTTGGTTAGAGAGCACTGTGGAT 2548 | ||| ||||||| || || ||| | || ||||| | ||||| || ||| Sbjct 588130 GATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA 588071 Query 2549 AAGTGAGGAAATAGTTTTTGGCATATATTTGAAAACGCTTAGGAG 2593 |||||||||||||||||| | || |||| ||| | || |||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTTCGGAG 588026 >seq1129 Length=1508174 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1291 TTTCCTCAGGTTGTGGTTGAATTGTATATGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1350 |||| | | ||||| |||||| ||||| |||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1351 TGGTCTC 1357 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690884368208