Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027129.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq2957 78.8 2e-11 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 236/347 (68%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 2231 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2290 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2291 TCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2350 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2351 GCTGACCTGGTTGGG-GATACGAGGTCGAAGAATCGTTTGTTCGTGCACTGGTACTTCCC 2409 | ||| | ||| |||| | ||| || |||| || || ||||| | | || || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2410 ATCGAACTGTATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGCAGCTCTCTGCAGA- 2468 ||| || || || || || | ||| |||||||| || ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2469 TCTTGATGTATTTTTTGTTTACTGGGGTA--TGTAGGTTTTGTAATTGGGAGAGGGTTTC 2526 |||| ||| | |||| | || | ||||| || | ||||| || || || | || Sbjct 1743381 TCTT-ATG-AATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA-AGAGCATC 1743437 Query 2527 TTCTTTAGTCAGAGAGCAT-TTGGGATAAGTGAGGAAGTAGTTTTTG 2572 ||||| || || || ||| |||||| |||||||||| | |||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 >seq2957 Length=4215098 Score = 78.8 bits (86), Expect = 2e-11 Identities = 134/188 (71%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 1293 AACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTTATGATGTC---TTTGTTC 1349 || |||||| | ||||||| |||||||||| |||| | |||||||| |||||| Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1350 ATCAGGAATGGCCGGTCGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCC 1409 | ||||| | ||||| ||||||||||||||| || ||||| | | ||| Sbjct 1238809 TT---GAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCC 1238865 Query 1410 CAGGTATACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGGTTCC-CCTGTGCGTGAAT 1467 ||||||| || |||| | ||| ||||| ||| ||| || |||| | ||||| ||| Sbjct 1238866 TAGGTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAAT 1238923 Query 1468 CCATGGTT 1475 |||| ||| Sbjct 1238924 CCATTGTT 1238931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662085414116