Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq519 118 2e-23 seq3069 111 3e-21 seq1694 93.3 7e-16 seq2957 78.8 2e-11 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 276/404 (68%), Gaps = 18/404 (4%) Strand=Plus/Plus Query 2248 CCCCTTGCAGACCTTCCATCGATCTGAAACTCTCCCCAATCGATGGTGTCTCCATCCTTA 2307 ||||| |||| |||||||| || ||||| || ||||||| | |||||| ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2308 TCGATGTAGGACTTGAC--ATCAGATGATGATTTAGCTCCCTGAATGTTTGGATGGAAAT 2365 || ||||| || || || |||| | | ||||||||| |||| ||||||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2366 GTGTTGATCTACTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTC 2425 | | | |||| || ||| | | |||||| || | | ||| ||||| | | || | Sbjct 1749077 GAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2426 CTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTTTCGTGAAGCTCTCTGCAAA 2485 || ||||| | | |||||| ||| ||||||| | | ||| || |||||||| | Sbjct 1749136 CTGTGAACTAGAGATTA-CATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACA 1749193 Query 2486 TTTTAATGTATAATTTA---TTTACAGG--AGTTTCTAGGGTTTGTAGTTGGGAAAGGGC 2540 ||| ||| |||||| ||| ||| |||| ||| ||| || || ||| | Sbjct 1749194 CTTTTATG---AATTTAAGATTTGTAGGGTAGTTG--AGGTTTTTGAGATGACGAAGAAC 1749248 Query 2541 TTCAGTTAATGAAAGAGAACA-CTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTT 2599 ||| | || || |||| || |||| |||| || |||||||||||| ||||||| Sbjct 1749249 ATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTC 1749307 Query 2600 TAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGA 2643 |||| || ||||||||||| ||||| |||||||| Sbjct 1749308 TAAACATGTTATTGGGAGCCATTTTTCAAATGT-TACCGATTGA 1749350 Score = 93.3 bits (102), Expect = 7e-16 Identities = 171/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 1313 TTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAAT 1372 ||||||| |||| ||||| | ||||| ||| ||||||||||| | |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1373 GGTTTCTGGCTGTGTTC-TGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAA 1431 || || ||| ||| ||||||||||||||| |||| ||| || ||||| | | Sbjct 1741937 TGTCTC-CTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1432 AACGCCATTCTCTGC-TTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTG 1490 || ||||| | ||| ||| | ||||| ||||||| ||| | |||||||| ||| Sbjct 1741996 TACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1491 ATGCAGTTGATGTGAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTG 1550 | ||||| ||||| | || ||| ||| ||||||| || || | ||||| ||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTA 1742113 Query 1551 ATTG 1554 |||| Sbjct 1742114 ATTG 1742117 >seq3069 Length=10854949 Score = 111 bits (122), Expect = 3e-21 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1313 TTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAAT 1372 ||||||| |||| ||||| | ||||| || ||||||||||| || |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1373 GGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAA 1432 ||| || |||| ||||| |||||||||||||||||| || || || ||| | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1433 ACGCCATTCTCTGC-TTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTGA 1491 ||| |||| | ||| | || | ||||| || ||| ||||| |||| ||| ||| Sbjct 3754528 ACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCT 3754586 Query 1492 TGCAGTTGATGTGAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTGA 1551 |||| || |||| | ||||||| ||| ||||| | || | |||||||| | ||| | Sbjct 3754587 TGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTTCTCCTAA 3754646 Query 1552 TTG 1554 ||| Sbjct 3754647 TTG 3754649 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 2250 CCTTGCAGACCTTCCATCGATCTGAAACTCTCCCCAATCGATGGTGTCTCCATCCTTATC 2309 ||| ||||| ||||||||||| ||||| || |||||||| | | |||||| ||||| || Sbjct 599258 CCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTC 599199 Query 2310 GATGTAGGACTTGACATCAGATGATGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGT 2369 ||||| || || |||| ||| | |||||| | ||||| |||||||||| || | Sbjct 599198 AATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAAT 599139 Query 2370 TGATCTACTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTCCTTC 2429 | ||| | ||| | | |||||| || || | || || || | | |||||| Sbjct 599138 AGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGT 599080 Query 2430 GAACTGAACAAGGGCATGCAGATGAGGTTCCCCATT 2465 ||| | | ||| | || | ||| |||||||| || Sbjct 599079 GAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTT 599044 Score = 86.0 bits (94), Expect = 1e-13 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1311 CCTTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGA 1370 ||| | |||| |||| ||||| | || || || || |||||||| | |||||| Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1371 ATGGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAA 1430 ||||| || |||| ||||||||||||||| || |||| || ||||| | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1431 AAACGCCATTCTCTGC-TTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTT 1489 | |||||||| | ||| ||| |||||| ||||||| |||| |||||||| ||| Sbjct 596532 ATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Query 1490 GATGCAGTTGATGTGAAGATAGTATGAGCAGCCACA 1525 |||| || || || | || |||| ||| ||||| Sbjct 596473 CCTGCAATTAATATGTTGGTAATATGTGCAACCACA 596438 >seq2957 Length=4215098 Score = 78.8 bits (86), Expect = 2e-11 Identities = 166/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 1313 TTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAAT 1372 ||| ||| ||||| ||||| | ||||| || ||||||| | | | |||||||| Sbjct 1238755 TTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAAT 1238814 Query 1373 GGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAA 1432 | | || |||| ||||||||||||||| || |||| || ||| || || | Sbjct 1238815 GATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATAT 1238874 Query 1433 ACGCCATTCTCTGC-TTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTGA 1491 || |||| | ||| |||| ||| ||| | | | | ||||| |||||||| ||| | Sbjct 1238875 ACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCA 1238933 Query 1492 TGCAGTTGATGTGAAGATAGTAT-GAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTG 1550 | |||| ||||| | || ||| | ||| ||||| | ||| || |||||| | || Sbjct 1238934 TATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCTTTCTTCTA 1238993 Query 1551 ATTG 1554 |||| Sbjct 1238994 ATTG 1238997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8834869701570