Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028114.1 Length=2765 Score E Sequences producing significant alignments: (Bits) Value seq519 127 4e-26 seq3069 93.3 7e-16 >seq519 Length=3254320 Score = 127 bits (140), Expect = 4e-26 Identities = 240/346 (69%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 2236 ccccTTGCAGATCGTCCATCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTG 2295 ||||| ||||||| |||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2296 TCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2355 |||||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2356 GCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATCGTTGATTGGTACTATTGTATTTTCCC 2415 | ||| | ||| | | ||| || |||| ||||||||| | | | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCT 1743321 Query 2416 TCGAATTGAATGAGGGCATGCATATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAGATT 2475 ||| || || || |||||| ||| |||||||| || ||| || ||| |||| | | Sbjct 1743322 GTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACT 1743381 Query 2476 TTGATAAATAGCTTATTTACTGGGGT--TTGAAGGGCTCTT-ATTTGGGAAAGTGCTTCC 2532 | || ||| |||| | |||| |||| |||| || | || ||| || || Sbjct 1743382 CTTATGAATTTTAGATTTG-TAGGGTAGTTGA--GGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2533 TCTTTAGTGAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTG 2577 ||||| ||||| || ||| |||||| |||||||||||| ||||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 Score = 91.5 bits (100), Expect = 3e-15 Identities = 235/347 (68%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 2236 ccccTTGCAGATCGTCCATCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTG 2295 ||||| |||||| |||||| || ||||| || |||| || | |||||| ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2296 TCGATGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2353 || ||||| || || || || || | |||||||| |||| || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2354 GTGCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATCGTTGATTGGTACTATTGTATTTTC 2413 | | || | ||| ||| | ||||| || | ||||||||| | | |||| | Sbjct 1749077 GAATGGTTCTATTAGGGTTTGTATG-TCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2414 CCTCGAATTGAATGAGGGCATGCATATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAGA 2473 | ||| | | || |||||| ||| ||||||| | || ||| || |||||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACA 1749193 Query 2474 TTTTGATAAATAGCTTATTTACTGGGGT--TTGAAGGGCTCTTATTTGGGAAAGTGCTTC 2531 ||| || ||| |||| | |||| |||| || | | | || ||| | || Sbjct 1749194 CTTTTATGAATTTAAGATTTG-TAGGGTAGTTGA-GGTTTTTGAGATGACGAAGAACATC 1749251 Query 2532 CTCTTTAGTGAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTG 2577 ||||| ||||| | ||| |||||| ||||||| |||||||||||| Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTG 1749297 Score = 84.2 bits (92), Expect = 4e-13 Identities = 155/219 (71%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 1301 TTCCTCAGGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAAT 1360 ||||| || |||| |||||| |||||||| | ||||||||||||| |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1361 GGCCGGTTGTCGTGGTCG-ATAATCTTGAAATATAGGGGATTTTGTATCTCCCA--GATA 1417 | | | | || ||| | ||||||||||| |||| |||| ||| ||||| |||| Sbjct 1741937 TGTCTCCTCTGGT-TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1418 AACACGCCACTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGAT 1476 ||| ||| | | ||| ||||| ||||| ||||||| ||| || ||||||| | Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1477 CGATGCAGTTGATGTGTAGATAGTATGAGCAGCCGCAGT 1515 | ||||| |||||| | || ||| ||| || |||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGT 1742090 >seq3069 Length=10854949 Score = 93.3 bits (102), Expect = 7e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 1301 TTCCTCAGGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAAT 1360 ||||| |||||| ||||||| |||||||| ||||||||||||| |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1361 GGCCGGTTGTCGTGGTC--GATAATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAA 1418 || | | | ||| || | ||| ||||||||||||||||||| ||| || || ||| Sbjct 3754468 GGTCTCCTCTGGTG-TCATGTTAA-CTTGAAATATAGGGGATTTGGTACTTCTCAAATAT 3754525 Query 1419 ACACGCCACTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGATC 1477 | ||| || | | ||| | ||| | ||||| || ||| |||||| ||| ||| | Sbjct 3754526 ATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1478 GATGCAGTTGATGTGTAGATAGTATGAGCAGCCGCA 1513 |||| || |||| | | ||||||| ||| || || Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8735673410100