Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028124.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq1129 93.3 7e-16 seq2957 91.5 3e-15 seq519 91.5 3e-15 seq1694 87.8 3e-14 >seq1129 Length=1508174 Score = 93.3 bits (102), Expect = 7e-16 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 1307 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAA 1366 |||||| | ||||| |||||||||||||||| ||||||| ||| | || ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1367 TGGTCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAA 1426 ||||| | ||||| | |||||||||| ||||| ||||| ||| || ||||| || | Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1427 TACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTT 1484 ||||||||| | | | || ||| ||| || | ||| || || ||||||| ||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTT 693600 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 1302 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATG 1361 || |||||| | ||||||| |||||||||||||||| ||||||| | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1362 AGGAATGGTCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAG 1421 ||||| ||| | ||||| |||||||||||||||| || ||||| | | ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1422 ATAAATACGCCATTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT 1480 || |||| |||| | ||| ||||| ||| ||| | | | | ||||| ||||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1481 GGTT 1484 ||| Sbjct 1238928 TGTT 1238931 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 1307 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAA 1366 |||||| || |||| ||||| |||||||||| |||||||| ||||| || || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1367 TGGTCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAA 1426 | |||| | |||| |||||||||||||||||||| |||| | | ||||| | | Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1427 TACGCCATTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTT 1484 ||| ||||| | ||| ||||| ||||| ||||||| ||| | ||||||| ||| Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1305 GCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGG 1364 |||||||| | || || ||||||| ||||| || |||||||| |||| || | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1365 AATGGTCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATA 1424 |||||||| | ||||| ||||||||||||||||||||||||| | | || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1425 AATACGCCATT 1435 ||||| |||| Sbjct 600112 TATACGTCATT 600102 Score = 86.0 bits (94), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 1317 TTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGTCTGTTG 1376 |||| ||||||||||| |||| || ||||| ||||| || ||||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1377 TGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAATACGCCATTC 1436 | ||| |||||||||||||||||| ||||| | | ||||| | |||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1437 TGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTT 1484 | ||| |||| |||||| ||||||| |||| ||||||| ||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8770872094170