Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028140.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq1129 152 9e-34 seq1694 125 1e-25 seq519 123 4e-25 >seq1129 Length=1508174 Score = 152 bits (168), Expect = 9e-34 Identities = 266/385 (69%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 1488 GCATTGTGAAGGGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1547 ||||| || || ||| | ||||| | | ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1548 TAACTGGCCCCCTCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1607 || | || || || |||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1608 ACTGGCTTTCCATATTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTC 1667 || || || ||||| || || || |||||||| | | || | ||||||| | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1668 CAATGTTTCATCTTTTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCG 1727 |||| ||||||||| | | || | || ||||| ||||| || ||| || || Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCA 679210 Query 1728 TTTGAGTAGACTCTTGGGTTGAAGTCCA---GATGCCCGCTTAGATAATTATGTGGGCCC 1784 || | | ||| | |||||| || | |||| ||| | | |||||||| || | Sbjct 679209 TTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCG 679150 Query 1785 AATGCACGAGCCCACATCGTCTTCCCCGTCCGACTATCACCTTCAACTATGATACTAATA 1844 | || || ||| | | || || || | ||||| ||||||| || ||||| || Sbjct 679149 AGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTA 679090 Query 1845 GGTCTGTCAGGCCGCGCAGCGGGAT 1869 ||||| || |||| |||| ||| || Sbjct 679089 GGTCTATCTGGCCACGCATCGGTAT 679065 >seq1694 Length=789422 Score = 125 bits (138), Expect = 1e-25 Identities = 205/292 (70%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 1488 GCATTGTGAAGGGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1547 ||||| || || ||||| ||||| | | |||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1548 TAACTGGCCCCCTCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1607 || || || || |||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1608 ACTGGCTTTCCATATTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTC 1667 || | || ||||| || || | |||||||| || ||| ||||||| | |||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1668 CAATGTTTCATCTTT--TTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCT 1725 | || ||||||||| || | || | |||| | ||||| ||| | || | | | || | Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGG-GAGCTG-CATCATCAATGTCATTATCTGGTGCAT 599629 Query 1726 CGTTTGAGTAGACTCTTGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATG 1777 | || || | ||| | |||||| || || ||||||| |||||||| Sbjct 599628 CATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 93.3 bits (102), Expect = 7e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1521 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCGCCTGGATTGCAGAGCACG 1580 ||||||||||| || | ||||||| | || || || || | | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1581 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTTGCTTTGCCA 1639 ||||||||||| || |||||||||| ||| || || ||||| || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 172/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 1488 GCATTGTGAAGGGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1547 ||||| || || |||| ||||||| | | |||||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1548 TAACTGGCCCCCTCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1607 || || ||||| | | ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1608 ACTGGCTTTCCATATTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTC 1667 || | || | | | || || || |||||||| || ||| ||||||| | |||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1668 CAATG----TTTCATCTTT--TTATGGGGCGGGCTGACGTCATCGATGACGTTGTAT 1718 ||||| | ||||||| |||| || | ||| || ||||| ||||| || ||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGG-GAGCT-ACATCATCAATGACATTATAT 1742492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8287699010920