Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028142.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq1129 170 3e-39 seq519 152 9e-34 seq1694 136 7e-29 >seq1129 Length=1508174 Score = 170 bits (188), Expect = 3e-39 Identities = 270/385 (70%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 1533 GCATTGTGAAGTGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1592 ||||| || || ||| | ||||| | | ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1593 TAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGA 1652 |||| || || || |||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1653 ACTGGCTTTCCGTATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTC 1712 || || || || || ||||| || |||||||| | | ||| | |||| ||||| || ||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1713 CAGTGCTTCAACTTTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCG 1772 | ||||||| ||||| ||| || || |||||||| ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCA 679210 Query 1773 TTTGAGTATACCCTTGGGTTGAAGTCCA---GATGTCCGCTTAGATAGTTATGCGGGCCT 1829 || | |||| | |||||| || | |||| ||| | | || ||||| || | Sbjct 679209 TTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCG 679150 Query 1830 AATGCACGAGCCCACATCGTTTTACCCGTTCGACTATCACCCTCAACAATCAAACTAATA 1889 | || || ||| | | ||||| || ||||||| || |||| || | ||| || Sbjct 679149 AGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTA 679090 Query 1890 GGTCTGTTGGGCCGCGCAGCGGGAT 1914 ||||| | |||| |||| ||| || Sbjct 679089 GGTCTATCTGGCCACGCATCGGTAT 679065 >seq519 Length=3254320 Score = 152 bits (168), Expect = 9e-34 Identities = 189/256 (74%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 1533 GCATTGTGAAGTGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1592 ||||| || || |||| ||||||| | | |||||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1593 TAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGA 1652 ||| || ||||| | | ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1653 ACTGGCTTTCCG-TATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTT 1711 || | |||||| | ||||| || |||||||| || |||| |||| |||||||| || Sbjct 1742378 AC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1712 CCAGTG----CTTCAACTTTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCG 1767 ||| || || || ||||| |||| || | |||||||| ||||| ||||| | Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATATGTTG 1742496 Query 1768 CATCGTTTGAGTATAC 1783 |||| || || |||| Sbjct 1742497 CATCATTGCAGAATAC 1742512 Score = 89.7 bits (98), Expect = 9e-15 Identities = 191/278 (69%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 1183 GTCGTCCAGA-CTTGGAAGTTCATGTACGCCTTGTGGAGATCCAACGCTCTCCTGAGGTT 1241 |||||||||| |||| || | || || ||||| || | | | | | ||||||| || Sbjct 1741829 GTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGATT 1741887 Query 1242 GTGGTTGAACCGGATCTGGACGTGGT--ATATCCTGGTGTTGGTGTATAGTGGATCCTCC 1299 || |||||| | ||||||| | || || |||| | || || | || ||||| Sbjct 1741888 GTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCCTCT 1741946 Query 1300 ACGTTGGT--TATCTTGAAATACAGGGGATTTGGGACTTCCCAGAAATACGCGCCATTCT 1357 || || |||||||||||| |||| |||||| | |||||| ||| | ||||| | Sbjct 1741947 GGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATTGT 1742006 Query 1358 CCGCCTGCGGCATAGTGAGTAGTTCCCCTGTGCGCGAATCCATTGTTCGCACAGTTGATG 1417 ||| || ||||||| ||||||| ||| | ||||||| |||| |||||| ||| Sbjct 1742007 TGCACTG-AGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAATG 1742065 Query 1418 TGAATGTATAAGGAGCAACCGCAGTTTAGGTCGATGCG 1455 || ||| | |||||| |||| || || ||||| Sbjct 1742066 TGTTGGTAATATATGCAACCACAGTATATATCAATGCG 1742103 >seq1694 Length=789422 Score = 136 bits (150), Expect = 7e-29 Identities = 204/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1533 GCATTGTGAAGTGTCCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1592 ||||| || || ||||| ||||| | | |||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1593 TAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGA 1652 ||| || || || |||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1653 ACTGGCTTTCCGTATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTC 1712 || | || || || ||||| | |||||||| || |||| |||| || ||||| ||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1713 CAGTGCTTCAACTTTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCG 1772 | ||||||| ||||| ||| || | ||||||| ||| | |||| ||||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCA 599627 Query 1773 TTTGAGTATACCCTTGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATG 1822 || || |||| | |||||| || || ||||||| || ||||| Sbjct 599626 TTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 98.7 bits (108), Expect = 2e-17 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1566 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACG 1625 ||||||||||| || | ||||||| | ||| || || || | | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1626 ATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGCTTTGCCA 1684 ||||||||||| || |||||||||| ||| || || || || ||||| || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8428493897592