Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028262.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq3069 109 1e-20 seq2957 98.7 2e-17 seq519 96.9 6e-17 seq1694 95.1 2e-16 >seq3069 Length=10854949 Score = 109 bits (120), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 1301 GCCTTCCTCAGGTTGTGATTGAACTGGATCCGGATGTTGATGATGTCGTGGT--TCATTA 1358 || ||||| |||||| ||||| || ||| |||| | ||||||||||||| | ||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1359 GGAATGGCCTGTTGTGGTGTTGTATTATCTTGAAATACAGGGGATTTTGAATCTCCCAGA 1418 ||||| || | |||||| | ||| ||||||||| ||||||||| | | || || | Sbjct 3754465 --AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAA 3754522 Query 1419 TATACGCGCCATTCTCTGC-CTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATG 1477 |||| || |||| | ||| || ||| | ||||| | ||| ||||| ||| ||| Sbjct 3754523 TATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATT 3754581 Query 1478 GTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACACGGTAGATCAACCCTCTT 1534 ||| | ||| || |||| | |||||||| ||| ||||| || || ||| | ||| Sbjct 3754582 GTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTT 3754638 >seq2957 Length=4215098 Score = 98.7 bits (108), Expect = 2e-17 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1301 GCCTTCCTCAGGTTGTGATTGAACTGGATCCGGATGTTGATGATGTCGTGGTTCATTAGG 1360 || ||| | ||||||| |||||||| ||| |||||| ||||||| | | || | | Sbjct 1238752 GCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTG 1238811 Query 1361 AATGGCCTGTTGTGGTGTTGTATTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATA 1420 |||| || | |||||| | ||||||||||||| || ||||| | | ||| || || Sbjct 1238812 AATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTA 1238871 Query 1421 TACGCGCCATTCTCTGC-CTGAGCTGCAGTGATGGACTCC-CCTGTGCGTGAATCCATGG 1478 || | |||| | ||| |||||| ||| ||| || ||| | ||||| ||||||| | Sbjct 1238872 TATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCATTG 1238929 Query 1479 TTGTGGCAGTTGATGTGTACGTAGTAT-GAGCACCCACACGGTAGATCA 1526 || |||| ||||| | ||| ||| | ||| |||||| ||||||| Sbjct 1238930 TTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 161/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 1304 TTCCTCAGGTTGTGATTGAACTGGATCCGGATGTTGATGATGTCGTGGTTCATTAGGAAT 1363 ||||| || |||| ||||| || ||| |||| | |||||||||||||| | ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1364 GGCCTGTTGTGGTGTTGTATTATCTTGAAATACAGGGGATTTTGAATCTCCCA--GATAT 1421 | || | |||| | || ||||||||||||| |||| |||| | | ||||| ||||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1422 ACGCGCCATTCTCTGC-CTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATGGTT 1480 | | ||||| | ||| |||||| ||||| ||||| ||| | ||||||| ||| Sbjct 1741997 A--CACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1481 GTGGCAGTTGATGTGTACGTAGTATGAGCACCCACACGGTAGATCAA 1527 ||||| |||||| ||| ||| ||| ||||| || ||||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 89.7 bits (98), Expect = 9e-15 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2216 CATCATCAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCC 2275 |||| || || | || | || ||| | ||||||||||||||| || ||||| | | | | Sbjct 1743119 CATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTC 1743178 Query 2276 AGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTTGCTC 2335 | || | ||| || || ||||| |||||||| || || |||| |||| | || || | Sbjct 1743179 AATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAA 1743238 Query 2336 CCTGGAAGTTTGGATGGAAATGAGTTGAGGTATTAGGGTGAGTTACATCGAAATGTCTGG 2395 || | ||| ||||||| ||| | | | ||||||||| || || ||| || Sbjct 1743239 ATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATT 1743298 Query 2396 GGTTTCTGAATTTGGATTTACCTTCGAACTGGATAAGGGCATGAAGATG 2444 | || || | | |||||||| ||| |||||||| |||| | ||| Sbjct 1743299 GATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATG 1743347 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 2222 CAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGA 2281 || |||| || | || || | |||||||||||||||||| ||||| | |||||| || | Sbjct 599277 CAACTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTA 599218 Query 2282 TGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTTGCTCCCTGGA 2341 ||| || || ||||| || ||||| || || |||| |||| || |||| ||| | Sbjct 599217 CGTAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAA 599158 Query 2342 AGTTTGGATGGAAATGAGTTGAGGTATTAGGGTGAGTTACATCGAAA 2388 |||||||||| ||| | | | |||||||| | || |||||| Sbjct 599157 CACTTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 Score = 87.8 bits (96), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 1313 TTGTGATTGAACTGGATCCGGATGTTGATGATGTCGTGGTTCATTAGGAATGGCCTGTTG 1372 |||| |||||||| || |||| | || ||||||||||| | |||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1373 TGGTGTTGTATTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATATACGCGCCATTC 1432 | |||| || ||||||||||||| || ||||| | | ||||| ||| ||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1433 TCTGC-CTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGA 1491 | ||| | |||| |||||| ||||| |||| ||||||| ||| ||| || | Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1492 TGTGTACGTAGTATGAGCACCCACA 1516 | ||| ||| |||| ||| ||||| Sbjct 596462 TATGTTGGTAATATGTGCAACCACA 596438 Score = 77.0 bits (84), Expect = 6e-11 Identities = 148/219 (68%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 1653 ATTCTTCTCTTCATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAA 1712 ||| | |||||||||| ||| ||||||||| | | |||||||| || | | Sbjct 599834 ATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATAC 599775 Query 1713 GATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCA 1772 ||| | | ||| ||| |||||||||||| | || || ||||| | |||||||| Sbjct 599774 GATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCA 599715 Query 1773 GTCTCTTTGGGCCCCCATGAATTCTTTAAAGTG------CTTTAGGTAGTGGGGATCTAC 1826 ||| |||| |||| || |||||||| | || ||||| ||| |||| || | Sbjct 599714 ATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGC 599655 Query 1827 GTCATCAATGACGTTGTACCAGGCATCATTATTGTATAC 1865 ||||||||| | || | |||||||| | | |||| Sbjct 599654 ATCATCAATGTCATTATCTGGTGCATCATTCTAGAATAC 599616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703683903360