Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028985.1 Length=2788 Score E Sequences producing significant alignments: (Bits) Value seq519 96.9 6e-17 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 258/381 (68%), Gaps = 20/381 (5%) Strand=Plus/Plus Query 2259 ACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGATGTCTCCGTC 2318 || ||| ||||| ||||||||||| | || ||| | | ||| | | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2319 TTTCTCCATGTAGGTTTTGACATC---GCTTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2375 || || ||||| | ||| |||| | |||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2376 GAAATGTGCTGACCTGGTTGGG-GAGGTGAGGTCGAAGAATCTATTG-TTCTTGCACTGG 2433 ||| || | ||| | ||| || | | ||| || |||| |||| || |||| | Sbjct 1743255 GAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATC-ATTGATTGGTGCAACAG 1743312 Query 2434 AACTTCCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCT 2493 || || ||| ||| ||||| || |||||||| || || ||| | ||| || ||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2494 CTGCAGATTCTAATGAATTTT---TTGGAAGTGGGTGTTTGGAGATTTAATAATTGGGAA 2550 |||| | ||| ||||||||| || | || ||| ||| | ||| || ||| Sbjct 1743373 TTGCACACTCTTATGAATTTTAGATTTGTAG--GGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2551 AGTGCTTCCTCTTTAGTAAGAGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATT 2609 | || || ||||| || || || || ||||||| ||||||| |||| ||||||| ||| Sbjct 1743431 -GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATT 1743488 Query 2610 TATTCTAAACCGATTGGGGGC 2630 ||||||||||| ||||| || Sbjct 1743489 TATTCTAAACC--TTGGGAGC 1743507 Score = 95.1 bits (104), Expect = 2e-16 Identities = 337/504 (67%), Gaps = 31/504 (6%) Strand=Plus/Plus Query 2131 AAATTACAATTTAAATTATGAAATTGGAGTA-GAAAGTCTCTTGGGGCTTTCTCCTTCAG 2189 |||||| |||| ||||||||| |||| || | |||| ||| ||||| ||||||| || | Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT-TTGGGTCTTTCTCTTTTAT 1748883 Query 2190 TATATTGAGGGCCTGAGCT-TTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGG 2248 ||| | | || | || |||| | | || || || || || ||| | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCGTATACATC--TGC 1748940 Query 2249 CAG-ATTGGCA-ACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAG 2306 | ||| | || ||| ||| | ||||||||||| | || ||| | | ||| | Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTAC 1749000 Query 2307 GATGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCC 2361 |||||| || || || ||||| | ||| || ||| | |||| |||||| Sbjct 1749001 ATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATAT 1749057 Query 2362 TGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTGAGGTCGAAGAATCTATTG 2421 |||| || |||||||| || | || | ||| || | |||||| || | |||| Sbjct 1749058 TGAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACC-ATTG 1749115 Query 2422 -TTCTTGCACTGGAACTTCCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGTCCCATC 2480 || |||| ||| |||||| ||| | || || |||||||| || || |||| | Sbjct 1749116 ATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTT 1749173 Query 2481 TTCGTGAAGCTCTCTGCAGATTCTAATGAATTT----TTTGGAAGTGGGTGTTTGGAGAT 2536 ||| || |||||||| | | | |||||||| |||| | |||| ||| || | Sbjct 1749174 GCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTA---GGGTAGTTG-AGGT 1749229 Query 2537 TTAATAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCA-CTTGGGATAAGTGAGAAAA 2595 || | || ||| | || ||||| || || | || ||||||| ||||||||||| Sbjct 1749230 TTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAA 1749288 Query 2596 TAATTTTTGGCATTTATTCTAAAC 2619 ||||||||| ||||||||||||| Sbjct 1749289 TAATTTTTGCTATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8809270658610