Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028989.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq1129 80.6 5e-12 seq1694 77.0 6e-11 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 125/176 (71%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 1293 TCCTCAGGTTGTAGTTGAACTGGATCTGCACGGTGATTATGTCGTGGCTCATCATGAATG 1352 |||| | ||||||||||||||| ||||| | || |||| |||| | | |||| | Sbjct 693773 TCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAACG 693714 Query 1353 GCCTCTCGTGGTGTTGTGTTACTTTGAAATAGAGGGGATTGTTGACCGTCCAGATATATA 1412 | ||| ||||||||||||| ||| ||||| ||||| | | || ||| |||||| Sbjct 693713 GTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATATA 693655 Query 1413 CGCCATTCTCTGCCTGAGCTGCAGTGATGCGTTCCCCGGTGCGTGAATCCATGGTT 1468 ||||||| | | || || ||| ||| | | |||||| || ||||||| ||| Sbjct 693654 CGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTT 693600 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 120/169 (71%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 1301 TTGTAGTTGAACTGGATCTGCACGGTGATTATGTCGTGGCTCATCATGAATGGCCTCTCG 1360 |||||||||||||| || || | || ||||||||| | | ||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1361 TGGTGTTGTGTTACTTTGAAATAGAGGGGATTGTTGACCGTCCAGATATATACGCCATTC 1420 | |||| |||||| ||||||||||| |||| || ||| |||||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1421 TCTGC-CTGAGCTGCAGTGATGCGTTCCCCGGTGCGTGAATCCATGGTT 1468 | ||| | |||| |||||| ||||||| |||| ||||||| ||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904