Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029105.1 Length=2700 Score E Sequences producing significant alignments: (Bits) Value seq1129 113 8e-22 seq519 109 9e-21 seq1694 107 3e-20 >seq1129 Length=1508174 Score = 113 bits (124), Expect = 8e-22 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 1599 TTTTCAGATTTGTCGAGGAAATCTTTATAACTAGCCCCCTCGCCTGGATTGCACAGCACG 1658 ||||| ||| || |||||||||||||| | || || || |||||||| |||| | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1659 ATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGCAATTGGATTGCCAG 1718 ||||| || | ||||||||| |||| || || || ||||||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1719 TCCCTTTGGGCCCCGATAAGTTCCTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTACA 1778 | | ||| | |||| || | || ||| | ||||| | ||||| ||| || ||||| Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1779 TCATCAATGACGTTATA 1795 ||||| ||||| ||||| Sbjct 679236 TCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 109 bits (120), Expect = 9e-21 Identities = 169/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 1566 GCATTATGTAATGTCCAGGCTTTGAGAGCTGAGTTTTCAGATTTGTCGAGGAAATCTTTA 1625 ||||| |||| |||| ||||||||| ||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1626 TAACTAGCCCCCTCGCCTGGATTGCACAGCACGATTGAAGGAACCCCGCCTTTAATTTGA 1685 || || ||||| | | ||| ||||| |||||||| || | || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1686 ACAGGCTTTCCG-TACTTGCAATTGGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCCTT 1744 || | |||||| |||||||||| |||||| || |||| |||| || | ||| || Sbjct 1742378 AC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1745 CCAGTG----CTTTAGCTTTAGATAATGCGGG-CTTACATCATCAATGACGTTATA 1795 ||| || || | ||||| | ||| ||| ||||||||||||||| ||||| Sbjct 1742437 CCAATGCTACCTACATCTTTA-AGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 80.6 bits (88), Expect = 5e-12 Identities = 243/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 2182 TTTGCTGACCTCCTCTAGCACTTCGTCCGTCGATCTGGAATGTTCCCCATTCAAGAGTGT 2241 |||||| || ||| |||||| || ||| || || || || | || || | || Sbjct 1743131 TTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGT 1743190 Query 2242 CTCCTTCCTTCTCGACATAGGACTTGACGTCGGAGCTGGAACTAGCTCCCTGATAGTTTC 2301 |||| ||||| |||| || || || || | ||| | || ||| ||| ||| Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2302 CATGAAAATGGGTTGATCTTGTTGGG-GATACCAGATCGAAGAATCTTTGATTTGTGCAC 2360 ||| || || | | ||| | ||| |||| | || || |||| |||||| ||||| Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAA 1743309 Query 2361 TGGTATTTTCCTTCCAGTTGCAGAAGCACGTGGAGATGAGGCTCCCCATTTTCATGAAGT 2420 | |||| ||| | || | ||| || || | ||| || ||||| || || ||| Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2421 TCTCTACATATTTTTATGTATTTCTTGTTGGT-GGGTATTTGAAGGTT--GAGAATTTGG 2477 ||| | || | | ||||| |||| || || ||||| |||| | || |||| || Sbjct 1743370 TCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG- 1743428 Query 2478 GAAAGAGCTTCTTCTTTGGTAAGTGTACA-CTGGGGATAAGTGAGGAAATAATTCTTGGC 2536 |||||| || ||||| || || | ||| || |||| |||||||||||| ||| ||| Sbjct 1743429 --AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCT 1743485 Query 2537 ATTTATT 2543 ||||||| Sbjct 1743486 ATTTATT 1743492 >seq1694 Length=789422 Score = 107 bits (118), Expect = 3e-20 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 1615 GGAAATCTTTATAACTAGCCCCCTCGCCTGGATTGCACAGCACGATTGAAGGAACCCCGC 1674 ||||||||||||| || || || |||||||| |||| |||||||| | | | | Sbjct 599817 GGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACAC 599758 Query 1675 CTTTAATTTGAACAGGCTTTCCGTACTTGCAATTGGATTGCCAGTCCCTTTGGGCCCCGA 1734 ||||||||||||| | || || |||||||||| |||||| || |||| |||| | Sbjct 599757 ATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAA 599698 Query 1735 TAAGTTCCTTCCAGTGCTTTAGCTTTAGATAA-TGCGGGCTTACATCATCAATGACGTTA 1793 ||| ||| ||| | ||||| | ||||| ||| || | ||| ||||||||||| | ||| Sbjct 599697 TAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTA 599639 Query 1794 T 1794 | Sbjct 599638 T 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8530890178808