Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029804.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq1694 114 2e-22 seq3069 104 4e-19 seq519 104 4e-19 >seq1694 Length=789422 Score = 114 bits (126), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1318 CCTTCCTGAGGTTGTGGTTGAATCGGATTTGGATTGATATTATGTCGTGGTTGCTGTTGA 1377 ||| | ||| |||| |||||| | |||||||| ||| |||||||||||| |||||| Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1378 AGGGTCTGGACAGGTGGTCTGTTATCCTGAAATATAGGGGATTTGTTATCTGCCAGGTAA 1437 | ||| | | ||| ||||||| ||||||| || |||||| || | ||| | | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1438 AAACGCCATTCTGTGC-CTGAGGAGCAGTGATGAT-ATCCCCTGTGCGTGAATCCATGGT 1495 | |||||||| | ||| | ||| |||||| ||| ||||| |||| ||||||| || Sbjct 596532 ATACGCCATTGT-TGCACCGAGCCACAGTGA-GATGTTCCCCAGTGCAAAAATCCATCGT 596475 Query 1496 TGGTGCAGTTAATATGCATATAATATGAGCAACCGCAAT 1534 | |||| |||||||| ||||||| |||||| |||| Sbjct 596474 TCCTGCAATTAATATGTTGGTAATATGTGCAACCACAAT 596436 >seq3069 Length=10854949 Score = 104 bits (114), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 1320 TTCCTGAGGTTGTGGTTGAATCGGATTTGGATTGATATTATGTCGTGGTTGCTGTTGAAG 1379 |||||||||||| ||||||| | || ||||| ||| |||||||||| | |||| || Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1380 GGTCTGGACAGGTGGTCTGTTATCCTGAAATATAGGGGATTTGTTATCTGCCAGGTAAAA 1439 ||||| | |||| ||||| | |||||||||||||||||| || | || || | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1440 ACGCCATTCTGTGC-CTGAGGAGCAGTGATGATATCCCCTGTGCGTGAATCCATGGTTGG 1498 ||| |||| | ||| || || | ||||| | | ||| ||||| ||| ||| ||| Sbjct 3754528 ACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCT 3754586 Query 1499 TGCAGTTAATATGCATATAATATGAGCAACCGCA 1532 |||| ||||| | || |||| |||||| || Sbjct 3754587 TGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 1320 TTCCTGAGGTTGTGGTTGAATCGGATTTGGATTGATATTATGTCGTGGTTGCTGTTGAAG 1379 |||||||| |||| |||||| | || |||||| ||| |||||||||||| |||| || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1380 GGTCTGGACAGGTGGTCTGTTATCCTGAAATATAGGGGATTTGTTATCTGCCAGGTAAAA 1439 |||| | ||| ||||||| ||||||| |||| ||||| || | ||| | | | Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1440 ACGCCATTCTGTGC-CTGAGGAGCAGTGATGAT-ATCCCCTGTGCGTGAATCCATGGTTG 1497 || ||||| | ||| |||| | ||||| ||| ||||| ||| | ||||||| ||| Sbjct 1741997 ACACCATTGT-TGCACTGA-GCCTAGTGA-GATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1498 GTGCAGTTAATATGCATATAATATGAGCAACCGCA 1532 | |||||||| || |||||| |||||| || Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACA 1742088 Score = 93.3 bits (102), Expect = 7e-16 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 2246 TGCTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGATATTC-TCCCCAGCTGGTTGTGTC 2304 ||||| | ||| ||||||||||| || || || ||| | || || | | || | ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGT-AGTC 1743191 Query 2305 GCCGTCCTTGTCGATATAGGACTTGACATCTGAGCTTGATTTAGCTCTCTGAATGTTTGG 2364 || ||||| ||||| || || || |||| ||| ||||||||| |||| ||| | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2365 ATGGTAAT--ATGCTGACCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCAG 2422 |||| | | ||| | ||| | ||| | | ||| || |||| ||||| ||||| Sbjct 1743252 ATGGAATTGAATG--GTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAA 1743309 Query 2423 TTGTATTTGCCCTGGAATTGAACCAGGGCATGCAGATGAGGTTCCCCAGATTC-GTGTAG 2481 | |||| || ||| || | || |||||| ||| |||||||| | | | |||||| Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCC-GTTGCTGTGTAG 1743368 Query 2482 TTCTCTACACACTTTTATGAAT 2503 |||| | |||||| |||||||| Sbjct 1743369 TTCTTTGCACACTCTTATGAAT 1743390 Score = 93.3 bits (102), Expect = 7e-16 Identities = 187/266 (70%), Gaps = 21/266 (8%) Strand=Plus/Plus Query 2248 CTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGATATTC-TCCCCAGCTGGTTGTGTCGC 2306 ||| | ||| ||| ||||||| || || || ||| | || |||| | || | ||| | Sbjct 1748950 CTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATA-GTCTC 1749008 Query 2307 CGTCCTTGTCGATATAGGACTTGAC--ATCTGAGCTTGATTTAGCTCTCTGAATGTTTGG 2364 | ||||| || || || || || || ||| || |||||||||| |||| ||||| Sbjct 1749009 CCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGG 1749068 Query 2365 ATGGTAAT--ATGCTGACCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCAG 2422 |||| | | ||| | || || ||| || | |||||| || | ||||| |||||| Sbjct 1749069 ATGGAATTGAATGGTT--CTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAG 1749125 Query 2423 TTGTATTTGCCCTGGAATTGAACCAGGG----CATGCAGATGAGGTTCCCCAGATTC-GT 2477 | |||| ||||| ||||| || | |||||| ||| ||||||| | | | || Sbjct 1749126 CAGAATTT-CCCTG----TGAACTAGAGATTACATGCAAATGTGGTTCCC--GTTGCTGT 1749178 Query 2478 GTAGTTCTCTACACACTTTTATGAAT 2503 |||||||||| ||||||||||||||| Sbjct 1749179 GTAGTTCTCTGCACACTTTTATGAAT 1749204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300