Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029908.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq1129 149 1e-32 seq519 145 1e-31 seq1694 134 2e-28 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 1463 CTGCATTCTTTAATGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTGTTGAGGAAATCTT 1522 ||||||| | | ||| | || ||||||| ||||||||||||| | |||||||||| Sbjct 679450 CTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTT 679391 Query 1523 TATAGCTTGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTT 1582 |||||| ||||| ||||| ||||| || | | ||||| ||||| |||||||||| Sbjct 679390 TATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTA 679331 Query 1583 GAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTT 1642 |||| || || || || |||||||| ||||| |||||||| | || | || |||| Sbjct 679330 GAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAATCTT 679272 Query 1643 TCCAGTGCTTTAGCTTTAAAT-AGTGCGGTGCGACATCATCAATGACGTTATA 1694 || | ||||| | |||||| | |||| || | |||||||| ||||| ||||| Sbjct 679271 TCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 145 bits (160), Expect = 1e-31 Identities = 175/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1465 GCATTCTTTAATGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTGTTGAGGAAATCTTTA 1524 ||||| | || |||| || ||||| | | |||||||||| || | |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1525 TAGCTTGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGA 1584 ||| ||||||||||| ||| ||| | ||||||| |||||| ||||||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1585 ACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTTC 1644 || | || | | |||||||| ||||| |||||||| | || | || |||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1645 CAGTG----CTTTAGCTTTAAATA-GTGCGGTGCGACATCATCAATGACGTTATA 1694 || || || | |||||| || ||| || || |||||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 134 bits (148), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 1464 TGCATTCTTTAATGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTGTTGAGGAAATCTTT 1523 |||||| | | ||||| || ||||||| |||||||||||| | |||||||||| Sbjct 599867 TGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTT 599808 Query 1524 ATAGCTTGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTG 1583 |||| ||||| ||||| ||||| || | ||||||| || ||| ||| ||||||||| Sbjct 599807 ATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTG 599748 Query 1584 AACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTT 1643 ||| | || || || ||||||| ||||| |||||||| | || | | ||||| Sbjct 599747 AACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1644 CCAGTGCTTTAGCTTTAAATA-GTGCGGTGCGACATCATCAATGACGTTAT 1693 | | ||||| | |||||| || ||| || || ||||||||||| | |||| Sbjct 599687 CTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 104 bits (114), Expect = 4e-19 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1476 TGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTGTTGAGGAAATCTTTATAGCTTGCACC 1535 || ||| || || |||| ||||||||||||| | | ||||||| | ||| |||||| Sbjct 596259 TGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACC 596200 Query 1536 CTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCC 1595 |||| ||||||| | ||||||| |||||| ||||||||||||| ||| || || || Sbjct 596199 TTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCC 596140 Query 1596 GTATTTGCAATT 1607 || |||||||| Sbjct 596139 ATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8242900637888