Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029994.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq1694 77.0 6e-11 seq519 77.0 6e-11 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 105/147 (71%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAC 1749 |||||||| || | | ||||| || ||| ||| ||||||||||| ||||||| ||| Sbjct 599791 CCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATAC 599732 Query 1750 TTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTG------CTTT 1803 ||| || |||||||| || |||| |||| || || || || | || |||| Sbjct 599731 TTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTT 599672 Query 1804 AAGTAGTGGGGATCCACATCATCAATG 1830 ||||| |||| | ||||||||||| Sbjct 599671 AAGTAAGTGGGAGCTGCATCATCAATG 599645 >seq519 Length=3254320 Score = 77.0 bits (84), Expect = 6e-11 Identities = 109/155 (70%), Gaps = 10/155 (6%) Strand=Plus/Plus Query 1694 GATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1753 ||| ||| | | ||||| |||||| ||||||||||||| || |||||| ||||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGC 1742396 Query 1754 TATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTG----------CTTT 1803 ||| |||||||| || |||| |||| || || || || | || |||| Sbjct 1742397 AATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTT 1742456 Query 1804 AAGTAGTGGGGATCCACATCATCAATGACGTTGTA 1838 ||||| |||| | |||||||||||||| || || Sbjct 1742457 AAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729282973664