Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029995.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3069 134 2e-28 seq1694 111 3e-21 seq519 109 1e-20 seq2957 105 1e-19 seq1129 80.6 5e-12 >seq3069 Length=10854949 Score = 134 bits (148), Expect = 2e-28 Identities = 222/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 1149 ATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTA 1208 || ||||| || | |||||| || || | | ||||||||||| || |||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1209 AATACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGTCCAGATCTGGAAGATTAGA 1268 | | | | ||| || ||||| ||| ||| |||||||||| ||| | || Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATC 3754383 Query 1269 AAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTT 1328 | || || | | ||| |||||||| |||||| |||||||||||| |||||| | Sbjct 3754384 CATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT 3754443 Query 1329 ATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGG 1388 ||||||||||||| | |||| ||||||||| ||||| |||| ||||||||||||| Sbjct 3754444 ATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGG 3754503 Query 1389 GGATTTTTGATCGTC-CAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTC 1447 ||| ||| | | || || |||| ||| || | | ||| | || | |||||| || Sbjct 3754504 GGA-TTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTT 3754562 Query 1448 CCCTGTGCGAAAATCCAT 1465 ||| |||||||||| ||| Sbjct 3754563 CCCAGTGCGAAAATACAT 3754580 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1302 TTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCG 1361 |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1362 TGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTC 1421 | ||| |||||||||||||| || ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1422 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 100 bits (110), Expect = 5e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1290 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTG 1349 |||||||| | || || |||||| | ||| | |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1350 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTT 1394 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 270/401 (67%), Gaps = 13/401 (3%) Strand=Plus/Plus Query 2228 CCTCTTGCCGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTA 2287 || || || ||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2288 TCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2347 || | || || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2348 GCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTACTTACC 2406 | ||| | ||| |||| | ||| || |||| | ||| ||||| | | | ||||| Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2407 TTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGAT 2466 | ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2467 TTTAATATATTTTTTATTTGTAGGTGTAACT-AGGTTTTGTAATTGGGAAAGTGCTTCCT 2525 | | || ||||| ||||||||| ||| | ||| ||| | || ||| || || | Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2526 CTTTAGTAAGAGAACATTGTGGATAAGTAAGGAAATAGTGTTTTGCATTTAATTGGAAAC 2585 |||| || || |||||| ||| |||| ||||||| | |||||| || ||| |||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAAT-GATTTTTGCTATTTATTCTAAAC 1743498 Query 2586 GCTTAGGAGGAGCCATTGACTTGGTCAATTGGTACCAATTG 2626 ||| |||||||| || | || || ||||||||| Sbjct 1743499 -CTT---GGGAGCCAT----TTTTTAAAATGTTACCAATTG 1743531 Score = 107 bits (118), Expect = 3e-20 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1292 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1351 |||||| || |||| |||||| ||||| ||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1352 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATA 1411 | ||||| |||| |||||||||||||| |||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1412 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 80.6 bits (88), Expect = 5e-12 Identities = 364/560 (65%), Gaps = 24/560 (4%) Strand=Plus/Plus Query 2076 GAGGGGCAAAAATCCTATCTAAATTAGAATTTAAATTATGATATTGTAAAACATAATCCT 2135 ||||||| || || | | | ||||||||||| |||||||||||||||| || || || Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2136 TAGGGGCTAATTCCTTAAGTACGTTGAGAGCCTCCGATTTACTTCCGCTG-----TTAAG 2190 | ||| || || || | || ||| | || | || | ||| | || |||| Sbjct 1748865 TTGGGTCTTTCTCTTTTATTAT-TTGTAATGCTGC-ATCT-CTT--GGTGCATAATTAAT 1748919 Query 2191 TGCCTTGGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTGCCGATCTTCCATCGAT 2250 || | ||||| | || || || | || || || | ||||||||||| || Sbjct 1748920 CGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAAT 1748979 Query 2251 CTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAGATAGGACTTGA--CGTCG 2308 ||||| || |||| || | |||||| ||||| || | || || || | | || Sbjct 1748980 TTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCA 1749039 Query 2309 GAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACC 2368 || | |||||||| |||| || |||||||| || | || || ||| | Sbjct 1749040 AAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCT-ATTAGGGTTTGT 1749098 Query 2369 AGGTCGAAGAATCTGTTATTCGTGCATCTGTACTTACCTTCGAACTGGATAAGCACGTGG 2428 | |||||| || | | ||| ||||| | | | || ||| ||||| || | || || Sbjct 1749099 ATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGC 1749157 Query 2429 AGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTAATATATTTTTTATTTGTA 2488 | ||| || |||| | ||| || |||||||| | ||| || |||| ||||||| Sbjct 1749158 AAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTA 1749216 Query 2489 GGTGTAACT-AGGTTTTGTAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAACATTGTGG 2547 || ||| | ||||||| | || ||| | || ||||| || || ||||| ||| Sbjct 1749217 GG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGG 1749275 Query 2548 ATAAGTAAGGAAATAGTGTTTTGCATTTAATTGGAAAC-GCTTAGGAGGAGCCATTGACT 2606 |||| || ||||| | |||||| || ||| |||| ||| ||||||||| | Sbjct 1749276 GAAAGTGAGAAAATAAT-TTTTGCTATTTATTCTAAACATGTTATTGGGAGCCATT---T 1749331 Query 2607 TGGTCAATTGGTACCAATTG 2626 | |||| || |||| |||| Sbjct 1749332 T--TCAAATGTTACCGATTG 1749349 >seq2957 Length=4215098 Score = 105 bits (116), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1287 AACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTG 1346 || |||||| | ||||||| |||||| ||||| ||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1347 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCC-A 1405 ||||||| |||| ||||| |||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1406 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 |||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1292 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1351 |||| | | ||||| |||||| |||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1352 TGGTCTC 1358 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632