Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_030699.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 241/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 2237 GCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAAA 2296 ||||||| ||| || || ||||| || | || || | | |||||| ||||| || | Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2297 TATGACTTAACGTCGGAACTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGAC 2356 ||||| ||||| | || |||| |||| |||| || ||||||| || | | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2357 CTGCTTGGG-GAGACCAGGTCGAAGAATCTGTTATTTGTGCATTGGTATTTGCCTTCGAA 2415 ||| | ||| || | | ||| || |||| | ||| ||||| | |||| ||| ||| Sbjct 1743268 CTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2416 TTGCACAAGCACATGGAGATGAGGACTCCCATCTGCA-TGCAATTCTCGACAGA-TCTTA 2473 || | ||| ||||| | ||| || ||| | ||| || | |||| || | ||||| Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGT-TGCTGTGTAGTTCTTTGCACACTCTTA 1743385 Query 2474 ATGAATAATTTATTCACTGGTGTAGCT-AGGTTTTTTAATTGGGAAAGTGCTTCCTCTTT 2532 ||||| | ||| || |||| | ||| |||| | || ||| || || ||||| Sbjct 1743386 -TGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTT 1743443 Query 2533 TGTGAGAGAGCAT-TTGGGATATGTTATGAAGTAATTTTTGGCATTTATTCTAAA 2586 |||||| || ||| |||||| | || | ||| | ||||||| |||||||||||| Sbjct 1743444 TGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300