Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_030748.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq519 113 8e-22 seq3069 91.5 3e-15 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 265/391 (68%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 2207 CTGTTTGCTGTCCCCCTCTTGCAGATCTTCCGTCGACCTGGAACTCTCCCCATTCGATTG 2266 || |||||| | || || ||||||||||| || | || || || | || || | Sbjct 1743128 CTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGT 1743187 Query 2267 TGTCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGT 2326 |||||| ||||| ||||| || || || |||| ||| | ||||||| |||| | Sbjct 1743188 AGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACAT 1743247 Query 2327 TCGGATGGAAATGTGCTGACCTGGATGGG-GATACCAAGTCGAAGAATCGCTGATTCTGG 2385 | ||||||| || | ||| ||| |||| | ||| || |||| ||||| | Sbjct 1743248 TTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTG 1743306 Query 2386 CACTTGTATTTCCCTTCGAACTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGC 2445 || | |||| ||| ||| ||||| || || || | ||| |||||||| || ||| Sbjct 1743307 CAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGT 1743366 Query 2446 ATTTCCCTGCAGA-TCTTGATGAATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTG 2504 | ||| |||| | |||| ||||||||| |||||| ||| | ||| |||| | || Sbjct 1743367 AGTTCTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATG 1743425 Query 2505 GGAAAGTGCTTGTTCTTTGGTGAGGGAACAT-TTGGGATACGTTATAAAATAATTCTTCG 2563 ||| || | ||||| |||||||||||| |||||| | || | |||| ||| || Sbjct 1743426 ATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGC 1743484 Query 2564 AATTTATAAGAAAACGTTTGGGAGGCATGTT 2594 |||||| ||| | ||||||| ||| || Sbjct 1743485 TATTTATTCTAAACC--TTGGGAGCCATTTT 1743513 >seq3069 Length=10854949 Score = 91.5 bits (100), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 1286 GCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGT-TATTATGTCGTGGTTCGACAG 1344 |||||||| |||||| ||||||| ||||| || | | ||| |||||||||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTAT-CTGGATCTCTATGATGTCGTGGTCGTTGTT 3754463 Query 1345 AAAAGGCCTGCTGTGGTGGTCTGTCATCTTGAAATATAGGGGATTTGGAACCGTCCAGAT 1404 ||| || || || ||||| ||| | ||||||||||||||||||||| || || || Sbjct 3754464 AAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAAT 3754523 Query 1405 AAATGCGCCATTCTCGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGGT 1464 | || || |||| | | | ||| | ||||| | | ||| ||||| |||| ||| || Sbjct 3754524 ATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGT 3754583 Query 1465 TGTGGCAGCCAATGGCCAGGAAATAGGAGCACCCACA 1501 | | ||| |||| | || | || | ||| ||||| Sbjct 3754584 TCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904