Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_030749.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq1694 95.1 2e-16 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 254/370 (69%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 2203 TTGTTGACCTCCTCTTGCAGATCGCCCATCGATCTGAAATTCTCCCCATTCGAGAATGTC 2262 ||| | || ||| || ||||||| ||||| || ||||| || | || || | ||| Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTC 1743191 Query 2263 TCCGTCCTTGTGGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGG 2322 ||| ||||| | |||||| || || || | ||| | ||||||| |||| ||| | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2323 ATGGAAATGTGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCGGTTATTTTTGCATT 2381 |||||| || | ||| | ||| |||| | ||| || |||| | ||| |||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2382 GGAATTTGCCCTCGAACTGGATGAGCACGTGCAAATGAGGTTCCCCATTTTCATGAAACT 2441 |||||| || ||| ||||| || || |||||||| |||||||| || || | | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2442 CTCTGCATATTTTGATGTATTTTTTGGAAGT-TGGGGT--TTGAAGGTTTTGTAATTGGG 2498 || |||| | | | ||| ||||| || | | |||| |||| | ||||| || | Sbjct 1743371 CTTTGCACACTCTTATGAATTTTA--GATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG 1743428 Query 2499 AAAGTGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGTAAGGAAATAGTTTTTGGCAT 2558 || | || || ||||||||||| || ||| | || |||| ||||||| |||||| || Sbjct 1743429 AA-GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTAT 1743487 Query 2559 TTATTTTAAA 2568 ||||| |||| Sbjct 1743488 TTATTCTAAA 1743497 Score = 100 bits (110), Expect = 5e-18 Identities = 246/366 (67%), Gaps = 13/366 (4%) Strand=Plus/Plus Query 2209 ACCTCCTCTTGCAGATCGCCCATCGATCTGAAATTCTCCCCATTCGAGAATGTCTCCGTC 2268 || ||| || |||||| ||||| || ||||| || |||| || | | |||||| || Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTC 1749012 Query 2269 CTTGTGGATGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGG 2326 ||| | ||||| || || || || || | |||||||| |||| ||||||||| Sbjct 1749013 CTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGG 1749072 Query 2327 AAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGGTTATTTTTGCATTGGAAT 2386 || || | || || ||| | | |||||| || | | ||| |||| |||| Sbjct 1749073 AATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAAT 1749131 Query 2387 TTGCCCTCGAACTGGATGAGCACGTGCAAATGAGGTTCCCCATTTTCATGAAACTCTCTG 2446 || || ||||| || || || |||||||| ||||||| | | || | |||||| Sbjct 1749132 TTCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTG 1749189 Query 2447 CATATTTTGATGTATTT----TTTGGAAGTTGGGGTTTGAAGGTTTTGTAATTGGGAAAG 2502 || | ||| ||| |||| |||| | | | | |||| | ||||| || ||| | Sbjct 1749190 CACACTTTTATGAATTTAAGATTTGTAGGGTAG---TTGAGGTTTTTGAGATGACGAA-G 1749245 Query 2503 TGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGTAAGGAAATAGTTTTTGGCATTTAT 2562 | || ||||||||||| | ||| | || |||| || ||||| |||||| |||||| Sbjct 1749246 AACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 Query 2563 TTTAAA 2568 | |||| Sbjct 1749306 TCTAAA 1749311 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 254/384 (66%), Gaps = 17/384 (4%) Strand=Plus/Minus Query 2199 CTGATTGTTGACCTCCTCTTGCAGATCGCCCATCGATCTGAAATTCTCCCCATTCGAGAA 2258 ||| ||| | || || || ||||||| |||||||| ||||| || ||||| || | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2259 TGTCTCCGTCCTTGTGGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGT 2318 |||||| ||||| | ||||| || || || | ||| ||||| | ||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2319 TTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGGTTATTTTTGC 2378 |||||||||| || | ||| | ||| | | |||||| || | | || | | Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTC 599096 Query 2379 ATTGGAATTTGCCCTCGAACTGGATGAGCACGTGCAAATGAGGTTCCCCATTTTCATGAA 2438 | |||||| || ||| | || || ||||| ||||| |||||||| || | | Sbjct 599095 AACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2439 ACTCTCTGCATATTTTGATGTATTT----TTTGGA----AGTTGGGGTTTGAAGGTTTTG 2490 | |||| ||| | | | ||| |||| ||| | ||||||||||| |||| Sbjct 599035 ATTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTT------TTTG 598982 Query 2491 TAATTGGGAAAGTGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGTAAGGAAATAGTT 2550 ||| ||| | | || |||||| |||||||||| | || |||| |||||||||| Sbjct 598981 AAATGATGAA-GAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTT 598923 Query 2551 TTTGGCATTTATTTTAAA-TTGTT 2573 | | ||||||| |||| ||||| Sbjct 598922 TAAGCTATTTATTCTAAACTTGTT 598899 Score = 93.3 bits (102), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 2376 TGCATTGGAATTTGCCCTCGAACTGGATGAGCACGTGCAAATGAGGTTCCCCATTTTCAT 2435 |||||| |||||| || |||||||| || ||||||||||| |||||||| | | Sbjct 588229 TGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGTGCTGT 588170 Query 2436 GAAACTCTCTGCATATTTTGATGTATTT----TTTGGAAGTTGGGGTTTGAAGGTTTTGT 2491 | | |||||||| | | ||| |||| |||| ||| | | |||| | ||||| Sbjct 588169 GCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAGATAG---TTGAGGTTTTTGA 588113 Query 2492 AATTGGGAAAGTGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGTAAGGAAATAGTTT 2551 || ||| | | || ||||||| |||||| ||| | || |||| |||||||||||| Sbjct 588112 GATGATGAA-GAACATCATCTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAGTTT 588054 Query 2552 TTGGCATTTATTTTAAA 2568 | | ||||||| |||| Sbjct 588053 TAGCTATTTATTCTAAA 588037 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 255/389 (66%), Gaps = 36/389 (9%) Strand=Plus/Minus Query 2199 CTGATTGTTGACCTCCTCTTGCAGATCGCCCATCGATCTGAAATTCTCCCCATTCGAGAA 2258 ||| ||| | || ||| || ||| ||| || || || ||||| || ||||| || | | Sbjct 678772 CTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTACAT 678713 Query 2259 TGTCTCCG-----TCCTTGTGGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTG 2313 ||||||| ||||| | ||||| || || | || ||||||| || Sbjct 678712 AGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATC--------ATTTAGCAGATTG 678661 Query 2314 AATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGGTTATT 2373 || ||||||||| ||| || |||| | |||||| || | | ||| Sbjct 678660 AACATTTGGATGGTTCTGTT---ACTGTGTTGT-------ATGTCGAAAAACCTTTGATT 678611 Query 2374 TTTGCATTGGAATTTGCCCTCGAACTGGATGAGCACGTGCAAATGAGGTTCCCCA----- 2428 ||||| |||||| || |||||||| || ||||||||||| |||||||| Sbjct 678610 AGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGCCCG 678551 Query 2429 TTTTCATGAAACTCTCTGCATATTTTGATGTATTTTTTGGAAGT-TGGGGT--TTGAAGG 2485 || | | | | | |||| ||| | ||| | ||| || | | |||| |||| || Sbjct 678550 TTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTA--GATTTGTAGGGTAGTTGA-GG 678494 Query 2486 TTTTGTAATTGGGAAAGTGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGTAAGGAAA 2545 ||||| || ||| | || || ||||||| |||||| ||| | | || | |||||| Sbjct 678493 TTTTGAGATGATGAA-GAGCATCATCTTTTGAGAGAGAACATCTTGAGAAACTGAGGAAA 678435 Query 2546 TAGTTTTTGGCATTTATTTTAAAT-TGTT 2573 ||||||||| ||||||| ||||| |||| Sbjct 678434 TAGTTTTTGCTATTTATTCTAAATATGTT 678406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328