Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031306.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq519 120 5e-24 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 120 bits (132), Expect = 5e-24 Identities = 354/527 (67%), Gaps = 38/527 (7%) Strand=Plus/Plus Query 2082 AAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTA-ATACAAAATCTTTAGGAGC 2140 ||||| | | | ||||| ||||| ||||||||| | |||| | ||| ||||| || | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2141 CTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2200 ||||| |||| ||| | | | | || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2201 TGCGTCGTTGGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAA--ATT 2258 | | || | || || ||| ||||| ||||||||||| | ||| ||| || Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2259 CCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATC---GCTTGAGCTT 2315 || ||| | | |||||| || || || ||||| | ||| |||| | |||| | Sbjct 1743177 TCA--ATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---T 1743231 Query 2316 TTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGGTCGAA 2374 |||| |||| ||| ||||||| || | ||| | ||| ||| | | ||| || Sbjct 1743232 TTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAA 1743290 Query 2375 GAATCTATTGTTTC-TGCACTGGAACTTCCCTTCGAACTGGATGAGAACATGCAAGTGAG 2433 |||| |||| || |||| ||| || ||| ||| ||||| || |||||||| || | Sbjct 1743291 AAATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2434 GAGTCCCATCTTCATGAAGCTCTCTGCAGATTCTAATGAATTTT----TTGGA----AGT 2485 | ||| | || || ||| |||| | ||| ||||||||| ||| | ||| Sbjct 1743350 GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGT 1743409 Query 2486 TGGGG-TTTGGAGATTTAAGAATTGGGAAAGTGCCTCTTCTTTAGTGAGGGAGCA-CTTG 2543 || || ||| ||||| || || ||| || || ||||| |||||||| || |||| Sbjct 1743410 TGAGGCTTTTGAGAT----GA--TG---AAGAGCATCATCTTTTGTGAGGGAACATCTTG 1743460 Query 2544 GGATAAGTGAGGAAATAATTTTTGGCATTTATTTTAAACCGATTGGG 2590 ||| |||||||||||| ||||||| ||||||| |||||| ||||| Sbjct 1743461 GGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAACC--TTGGG 1743504 Score = 109 bits (120), Expect = 1e-20 Identities = 563/867 (65%), Gaps = 66/867 (8%) Strand=Plus/Plus Query 1754 TTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTG-------TTTTAGATAGTGCG 1806 ||| || | | |||| || | || |||||||| || || ||| || |||| | Sbjct 1748474 TTGTCAATATTTTTGTGCACTAATTAATTCTTTCAAATGCTTCATTTTTAAGTAAGTGGG 1748533 Query 1807 GATCTACGTCATCAATGACGTTGTACCAAGCATCATTGTTGTACACTCTAGGGCTTAGAT 1866 | | || ||||||||||| || || |||||||||| | | ||| | | || Sbjct 1748534 GG-CAACATCATCAATGACATTATATGTTGCATCATTGTGGAATACTGATTTTTTGAAAT 1748592 Query 1867 CTAGATGCCCACACAAGTAATTATGTGGTCCCAGTGATCGTGCCCA-CATCGTTTTTCCT 1925 ||| || | | | ||||||||| | || ||||| | ||||| || ||||||||| Sbjct 1748593 CTAATTGATCCCTAATGTAATTATGACGGCCGAGTGAGGGGGCCCAGCA--GTTTTTCCT 1748650 Query 1926 GTTCTACTATCACCTTCAATTACTATACTTTTGGGTCTCAACGGCCGCGCAGCGGCACT- 1984 ||| ||| ||||||||| | ||||||||| ||||| | | ||||| |||| Sbjct 1748651 ATTCAACTTGGACCTTCAATGATTATACTTTTAGGTCTATATAGTTGCGCAAAAACACTT 1748710 Query 1985 -----GACGAC-ATTCTCGTCTGC--CCATTCTTCAAGTTCTTCTGGAACTTGATCGAAT 2036 || || || | ||| | ||||| | ||| ||||| || || ||||| Sbjct 1748711 TCCTCGATGAATATGTTTTTCTTCACCCATTGCTTTAGTGTTTCTGATAC--GA-CGAAT 1748767 Query 2037 GAAGAAGATGAAAAAGGAGAAATGTATTCCTCTATCGGAGGAGTAAAAATCCTATCTAAA 2096 || | | | ||| ||| | || |||| | || || | | | ||| Sbjct 1748768 GATTGTGTCTCCCATTGCGAACAATATACTAGAATTAGAGGGGCGAATATTCGACCCAAA 1748827 Query 2097 TTAGAATTTAAATTATGAAACTGTAATACAAAA-TCTTTAGGAGCCTTCTCCTTTAATAT 2155 |||||||| ||||||||| | |||| | ||| ||||| || | ||||| |||| ||| Sbjct 1748828 TTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTATTAT 1748886 Query 2156 ATTGAGGGCCGCTGCT-TTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAG 2214 | | || || || |||| | | |||| || || || || ||| | || || | Sbjct 1748887 TTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATC--TGCAAC 1748943 Query 2215 -ACTGGCA-ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAA--ATTCCATGATCAAGG 2270 | | | || ||| ||| | ||||||||||| | ||| ||| || ||| ||| | Sbjct 1748944 TATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCTACA 1749001 Query 2271 ATGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCCT 2325 |||||| || || || ||||| | ||| || ||| | |||| |||||| | Sbjct 1749002 TAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATATT 1749058 Query 2326 GAATGTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGTCGAAGAATCTATTGT 2385 ||| ||||||||||| || | || | ||| ||| | |||||| || | |||| Sbjct 1749059 GAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACC-ATTGA 1749116 Query 2386 TTC-TGCACTGGAACTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCT 2444 || |||| ||| |||||| ||||| || || |||||||| || || |||| | Sbjct 1749117 TTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTTG 1749174 Query 2445 TCATGAAGCTCTCTGCAGATTCTAATGAATTT----TTTGGA----AGTTGGGGTTTGGA 2496 || || |||||||| | | | |||||||| |||| | ||||| ||||| Sbjct 1749175 CTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTT--- 1749231 Query 2497 GATTTAAGAATTGGGAAAGTGCCTCTTCTTTAGTGAGGGAGCA-CTTGGGATAAGTGAGG 2555 || ||| || ||| | || ||||| ||||| | || ||||||| ||||||| Sbjct 1749232 ---TTGAGA--TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGA 1749285 Query 2556 AAATAATTTTTGGCATTTATTTTAAAC 2582 |||||||||||| ||||||| ||||| Sbjct 1749286 AAATAATTTTTGCTATTTATTCTAAAC 1749312 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 141/201 (70%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 2389 TGCACTGGAACTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCA- 2447 |||| | ||| |||||| |||||||| || || ||||| || || |||| | | Sbjct 588229 TGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGT-TCCCCGGTGCTG 588171 Query 2448 TGAAGCTCTCTGCAGATTCTAATGAATTT----TTTGGAAGTTGGGGTTTGGAGATTTAA 2503 || || |||||||| | || |||||||| |||| ||| | | | ||| ||| Sbjct 588170 TGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAGATAG----TTGAGGTTTTT 588115 Query 2504 GAATTGGGAAAGTGCCTCTTCTTTAGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAAT 2562 || || ||| | || ||||| | ||| || || ||||||| ||||||||||||| | Sbjct 588114 GAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAGT 588056 Query 2563 TTTTGGCATTTATTTTAAACC 2583 ||| | ||||||| |||||| Sbjct 588055 TTTAGCTATTTATTCTAAACC 588035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687684484420