Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031448.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq519 134 2e-28 seq1129 123 4e-25 seq1694 116 6e-23 >seq519 Length=3254320 Score = 134 bits (148), Expect = 2e-28 Identities = 344/510 (67%), Gaps = 14/510 (3%) Strand=Plus/Plus Query 1977 GCAAAAATTCTGTCCAAATTGCTAGAGAGGTTGTGATATTGGA-AGAGAAACTTTTCTGG 2035 || ||||||| |||||||| | || || |||||||| | || |||||| || || Sbjct 1742995 GCGAAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGG 1743054 Query 2036 TAGTTTCTCTTTTATTATT-GTCATGGCTTCTTCCTTTGAAGAAGCATTCAGTGCCTCCG 2094 | || ||||||||||||| || ||| | || |||| || ||| | || | | Sbjct 1743055 TCATT-CTCTTTTATTATTTGTAATGT-TGAATCTCTTGACCTAGAATTAATCGCTTTAG 1743112 Query 2095 ATGCTGCATCATTAGTTGTCTGTTGACCTCCTCTAGCAGATCTTCCGTCGATTTGAAAAT 2154 | |||| | | | || | || ||| |||||||||||||| || |||||||||| Sbjct 1743113 TGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAAT 1743172 Query 2155 GACCCCATTCGACGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCAGAGGATGACT 2214 | | || || ||||| || || || || |||||||| || || |||| ||||| ||| | Sbjct 1743173 CATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATT 1743232 Query 2215 TTGCACTCTGTATATTGGCATGGGA--GACGGAAGAGGTGTTTGGATG-TATGAGGTCGA 2271 | | | || | ||| |||| | || | | |||| || || ||| | ||| | Sbjct 1743233 TAGAAAATTGAACATTTTGATGGAATTGAATG--GTTCTGTTAGGGTGATAT-ATGTCAA 1743289 Query 2272 AGAATCTGCAATTCGTGCACTGGAACTTTCCTTGGAATTGAATGAGAGCATGCAAATGCG 2331 | |||| ||| ||||| ||| || ||| ||| || || || |||||||||| | Sbjct 1743290 AAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2332 GTTCCCCATTTTCGTGAAATTCTCTGCAGATTCTGATGTATTTCTTG--TTGACTGGTGT 2389 ||||||| || ||| | |||| |||| | ||| ||| |||| | | ||| ||| Sbjct 1743350 GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTT-TAGATTTGTAGGGTAG 1743408 Query 2390 TTCTAGGTTTTGTAGTTGTTCAATTGCACTCTCTTTTGTAACTGAGCATTTGGGGTATGT 2449 || ||| ||| || || | || ||| |||||||| | || ||| | ||| | || Sbjct 1743409 TT-GAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGT 1743467 Query 2450 GAGGAAGTAATTCTTGGCGTTTATTTTAAA 2479 |||||| | ||| ||| |||||| |||| Sbjct 1743468 GAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 118 bits (130), Expect = 2e-23 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 1491 AATTTTGCATTGTGTATCGTCCACTGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAA 1550 |||| ||||| |||| | |||| | | || | | | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1551 CATTTATAACTAGATCCCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTA 1610 |||||| | ||||||| ||| ||| | ||||| ||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1611 ATTTGAACTGGCTTGCCGTATTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAAT 1670 |||| ||| | || | | |||||||| |||||| |||||||| | ||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1671 TCTTTCCAATG----CTTTAACTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 ||||||||||| || | ||||| || ||| |||| || |||||||| || || Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Query 1727 T 1727 | Sbjct 1742492 T 1742492 Score = 87.8 bits (96), Expect = 3e-14 Identities = 209/303 (69%), Gaps = 15/303 (5%) Strand=Plus/Plus Query 1136 ATGTCGTCCAGA-CTTGGAAATTGAGATATGCCTTGTGAAGATCCAGTCTGTTCCTGAGG 1194 |||||||||||| |||| ||| | | |||||||| |||| | || | |||||||| Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1195 TTGTGGTTGAACCTTATCTGTATGTGGTATACTCTGGTTGTTG-TGTGTAGTGGATGGAT 1253 |||| |||||| |||||| || | ||| | | || |||| ||| | | || | Sbjct 1741886 TTGTAGTTGAAATGTATCTGGAT-TTCTATGATGTCGTGGTTGTTGTTAAAT---TGTCT 1741941 Query 1254 CCTCCCGTTGC---ATATCTTGAAATAAAGGGGATTTGTTATCCTCCAGATATATACGCC 1310 |||| ||| | |||||||||||| |||| ||||| || ||| |||||| || Sbjct 1741942 CCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACC 1742001 Query 1311 ACTCTCTGC-CTGACGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT-GTCCTCTGCA 1368 | | | ||| |||| | ||||| ||||||| ||| | ||||||| || | || || Sbjct 1742002 ATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC-CTACA 1742058 Query 1369 GTTAATATGTAGAAAAATTGAACAGCCACACTCTAGATCAATGCGACGTCTCCTGATCGC 1428 |||||| ||| | || | || ||||| | || ||||||||| | |||| || || Sbjct 1742059 GTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTAATTGC 1742118 Query 1429 ACG 1431 || Sbjct 1742119 GCG 1742121 >seq1129 Length=1508174 Score = 123 bits (136), Expect = 4e-25 Identities = 266/391 (68%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 1491 AATTTTGCATTGTGTATCGTCCACTGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAA 1550 |||| |||||| || | |||| | | | || | | ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1551 CATTTATAACTAGATCCCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTA 1610 |||||| | | || ||||| ||||| || | | ||| |||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1611 ATTTGAACTGGCTTGCCGTATTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAAT 1670 ||| |||| || || || || |||||||| |||||| |||||||| | |||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1671 TCTTTCCAATGCTTTAACTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTA--TT 1728 |||||| ||||||| | ||||| || ||| | || || || ||||| || || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1729 GCA-CATGGTTTGAATAGACCCGTGAATTGAAATCTA---GGTGGCCGCTCAAATAATTG 1784 ||| ||| | | |||| || | |||||||||| | |||||| | | ||||| Sbjct 679215 GCATCATTG-TGGAAT--ACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1785 TGGACCCCCAATGCACGTGCCCACATCGTCTTCCCCGTTCTAGAATCACCTTCGACGATG 1844 || | | || || ||| | | || || || ||| | ||||| | ||| Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATT 679099 Query 1845 ATACTGATAGGTCTTTCCGGCCGCGCAGCGG 1875 ||||| ||||||| || |||| |||| ||| Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 Score = 87.8 bits (96), Expect = 3e-14 Identities = 394/610 (65%), Gaps = 31/610 (5%) Strand=Plus/Minus Query 1977 GCAAAAATTCTGTCCAAATTGCTAGAGAGGTTGTGATATTGGAAGA-GAAACTTTTCTGG 2035 || || |||| ||| |||| | ||| || ||| |||| | | |||||| ||| || Sbjct 695400 GCGAATATTCAACCCATATTGGAATTGAGATTATGAGATTGTAGAATGAAACTCTTCGGG 695341 Query 2036 TAGTTTCTCTTTTATTATT-GTCATGGCTTCTTCCTTTGAAGAAGCATTCAGTGCCTCCG 2094 | || || |||||||||| || ||| | | || | || ||| ||| | || || | Sbjct 695340 TCATT-CTATTTTATTATTTGTAATGT-TGCATCTCTAGACCAAGAATTAATCGCTTCAG 695283 Query 2095 ATGCTGCATCATTAGTTGTCTGTTGACCTCCTCTAGCAGATCTTCCGTCGATTTGAAAAT 2154 | ||| | |||| || | || || |||||||||||| || |||| ||||| Sbjct 695282 CGTATACATATGCAATTGTTTGCTTACATCTCCTAGCAGATCTTTGATCAATTTCAAAAT 695223 Query 2155 GACCCCATTCGACGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCAGAGGATGACT 2214 ||| || || ||||| || || || || || ||||| || || |||||||||| | | | Sbjct 695222 CACCTCAATCTACGTACTCTCCCTCCTTTTCAATGTACGAGTTAACATCAGAGGCTAATT 695163 Query 2215 TTGCACTCTGTATATTGGCATGGGAGACGGAAGAGGTGTTTGGATGTATGAGGTCGAAGA 2274 | ||| || | ||| | |||| | | || |||| || ||| | | |||||| | Sbjct 695162 TAGCAGATTGAACATTTGTATGGAATTAGATAGTTTTGTTAGGGTGTTTTATGTCGAAAA 695103 Query 2275 ATCTGCAATTCGTGCACTGGAACTTTCCTTG-GAATTGAATGAGAGCATGCAAATGCGGT 2333 | || ||| || | ||| |||||||| ||| || | || ||| ||| ||| Sbjct 695102 ACCTTTGATTGATGGAACAGAA-TTTCCTTGTGAACTGGAGAAGTATGTGCGAATATGGT 695044 Query 2334 TCCCCATTTTCGTGAAATTCTCTGCAGATTCTGATGTA-TTTCTTGTTGACTGGTGTTTC 2392 ||||| || ||| | || ||| || || ||| | ||| | ||| ||| || Sbjct 695043 TCCCCGTTGCTGTGTAGTTTTCTACA----CTTATGAATTTTATATTTGTAGGGTAGTT- 694989 Query 2393 TAGGTTTTGTAGTTGTTCAATTGCACTCTCTTTTGTAACTGAGCATTTGGGGTATGTGAG 2452 ||| ||| || || | || || ||| ||| | || ||| | ||| | ||||| Sbjct 694988 GAGGATTTTGAGATGATGAAGACCATCATCTATTGAGAGAGAACATCTAGGGAAAGTGAG 694929 Query 2453 GAAGTAATTCTTGGCGTTTATTTTAAAACGCTTTGGGGGTGGCATATTTGTAAATATGAG 2512 ||| || || ||| |||||| || | | ||| || | ||| ||| ||| Sbjct 694928 GAAATAGTTTTTGCTATTTATTCTATACCTGTTTAGG---GCCATTTTTTCAAA------ 694878 Query 2513 AGTGTACCCCGATTG---AGCTCTCGTCCAAAAGT-CTATATGAATCGGTGTAATGGTGC 2568 |||| ||||||| ||||| | | ||||| | || |||||||| | ||| | Sbjct 694877 --TGTA-ACCGATTGAAAAGCTCACTT---AAAGTGCACTACCAATCGGTGAATTGGAGA 694824 Query 2569 CAATATATAG 2578 |||||||||| Sbjct 694823 CAATATATAG 694814 >seq1694 Length=789422 Score = 116 bits (128), Expect = 6e-23 Identities = 259/378 (69%), Gaps = 22/378 (6%) Strand=Plus/Minus Query 2007 TTGTGATATTGGAAGAGAAACTTTTCTGGTAGTTTCTCTTTTATTATT-GTCATG--GCT 2063 || ||||||| | ||||||||| ||| |||||||||||||||| || ||| || Sbjct 599376 TTATGATATTATAGATGAAACTTTTTGGGTC-TTTCTCTTTTATTATTTGTAATGTTGCA 599318 Query 2064 TCTTC---CTTTGAAG-AAGCA-TTCAGTGCCTCCGATGCTGCATCATTAGTTGTCTGTT 2118 ||| | | ||| || || ||||||| | | ||||| | ||| || | Sbjct 599317 TCTCTGGACCTAGAATTAATCACTTCAGTGTATACAC--CTGCAAC------TGTTTGCT 599266 Query 2119 GACCTCCTCTAGCAGATCTTCCGTCGATTTGAAAATGACCCCATTCGACGTAATCACCGT 2178 || || |||||||||||||| ||||||||||||| |||||| || ||||| || || | Sbjct 599265 TACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCT 599206 Query 2179 CTTTCTCGATGTAGGACTTGACATCAGAGGATGACTTTGCACTCTGTATATTGGCATGGG 2238 | || || ||||| || || |||| ||||| ||| |||| | ||| | | | | |||| Sbjct 599205 CCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGG- 599147 Query 2239 AGACGGAAGAG--GTGTTTGGATGTATGAGGTCGAAGAATCTGCAATTCGTGCACTGGAA 2296 | ||| || |||| || ||| | |||||| || || || || || ||| Sbjct 599146 -AATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAA 599089 Query 2297 CTTTCCTTGGAATTGAATGAGAGCATGCAAATGCGGTTCCCCATTTTCGTGAAATTCTCT 2356 |||||| ||||| | || | || ||||| |||||||| || || ||||||| Sbjct 599088 TTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCA 599029 Query 2357 GCAGATTCTGATGTATTT 2374 ||| | ||| ||| |||| Sbjct 599028 GCACACTCTTATGAATTT 599011 Score = 105 bits (116), Expect = 1e-19 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 1491 AATTTTGCATTGTGTATCGTCCACTGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAA 1550 |||| |||||| || | |||||| | | || | | |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1551 CATTTATAACTAGATCCCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTA 1610 |||||| | || ||||| ||||| || | ||||| ||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1611 ATTTGAACTGGCTTGCCGTATTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAAT 1670 |||||||| | || || || ||||||| |||||| |||||||| | ||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1671 TCTTTCCAATGCTTTAACTTTAGATAGTGGGGTGCTATGTCGTCAATG 1718 |||||| | ||||| | ||||| || ||| ||| || |||||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATG 599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313298081224