Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031451.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq1129 105 1e-19 seq519 96.9 6e-17 seq1694 86.0 1e-13 >seq1129 Length=1508174 Score = 105 bits (116), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1493 GTCCAGTTCCTGAGGGATGTATTTTCCTCTTTGTCGAGGAAATCTTTATAGC-TAATCCC 1551 ||| | ||| |||||| |||||||||||| || |||||||||||||||| || Sbjct 679436 GTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCT 679377 Query 1552 TGACCAGGATTGCAGAGCACGATTGCTGGGATCCATCCCTCCTTTAATTTGAACTGGCTT 1611 | ||| ||||| || | | ||||| ||||| | ||||||||| |||| || || Sbjct 679376 TCACCTGGATTACACAATAAGATTGATGGGAGGTA----ACCTTTAATTAGAACGGGTTT 679321 Query 1612 GCCGTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAATCAGTTCCTTCCAATGCTT 1671 || || || ||||| ||||| ||||| | | ||||||||| || ||| ||||||| Sbjct 679320 CCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAATCTTTCTAATGCTT 679262 Query 1672 TAACTTTAGATATTGCGGACTGACGTCATCGATGACGTTA 1711 | ||||| || ||| | || ||||| ||||| ||| Sbjct 679261 CATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTA 679222 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 129/178 (72%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 1494 TCCAGTTCCTGAGGGATGTATTTTCCTCTTTGTCGAGGAAATCTTTATA-GCTAATCCCT 1552 |||| ||| |||| | | ||||||||| || || |||||||||||||| | | |||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1553 GACCAGGATTGCAGAGCACGATTGCTGGGATCCATCCCTCCTTTAATTTGAACTGGCTTG 1612 || ||| ||| | ||||||| |||| || || |||||||||| ||| | || Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGG----ATGCCACCTTTAATTTAAACGAGTTTC 1742386 Query 1613 CCGTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAATCAGTTCCTTCCAATGCT 1670 | | || ||||| ||||| ||||| || ||||||||| ||| |||||||||| Sbjct 1742387 CGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCT 1742444 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 7/189 (4%) Strand=Plus/Minus Query 1493 GTCCAGTTCCTGAGGGATGTATTTTCCTCTTTGTCGAGGAAATCTTTATAG--CTAATCC 1550 ||||| ||| |||||| ||||||||||| || |||||||||||||| | | || Sbjct 599854 GTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCA-CC 599796 Query 1551 CTGACCAGGATTGCAGAGCACGATTGCTGGGATCCATCCCTCCTTTAATTTGAACTGGCT 1610 | ||| ||||| || | ||||||| || ||| | | |||||||||||| | | Sbjct 599795 TTCACCTGGATTACACAATACGATTGATGAGATGA----CACATTTAATTTGAACAAGTT 599740 Query 1611 TGCCGTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAATCAGTTCCTTCCAATGCT 1670 | || || || |||| ||||| ||||| || ||||||| | ||| ||| | |||| Sbjct 599739 TCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCT 599680 Query 1671 TTAACTTTA 1679 | | ||||| Sbjct 599679 TCATCTTTA 599671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8278099359556