Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031452.1 Length=2636 Score E Sequences producing significant alignments: (Bits) Value seq1129 140 5e-30 seq519 125 1e-25 seq1694 120 5e-24 >seq1129 Length=1508174 Score = 140 bits (154), Expect = 5e-30 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 1480 AATTTCGCATTGTGAAGGGTCCAACTCTTTAATGCTGCGTTCTCTTCTTTGTCTAGGAAA 1539 |||| ||||| || || ||| || |||| | || | || || ||||| ||||||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1540 TCTTTATAGCTGGCCCCTTCACCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCC 1599 |||||||||| || |||||||| ||||| || | | ||||||||||| | | || Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTA----ACC 679339 Query 1600 TTTAATTTGAACCGGCTTTCCGTATTTGCAGTTCGATTGCCAGTCCTTTTGAGCCCAATC 1659 ||||||| |||| || || || || ||||| || |||||| || ||||| ||||||| Sbjct 679338 TTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTGCCCCCAATC 679279 Query 1660 AATTCTTTCCAGTGCTTTAGCTTTA 1684 || |||||| | ||||| | ||||| Sbjct 679278 AAATCTTTCTAATGCTTCATCTTTA 679254 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 1480 AATTTCGCATTGTGAAGGGTCCAACTCTTTAATGCTGCGTTCTCTTCTTTGTCTAGGAAA 1539 |||| ||||| || || ||||| |||| | ||| | || || || || ||||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1540 TCTTTATAGCTGGCCCCTTCACCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCC 1599 ||||||||| || || |||| ||| ||| | ||||||||||||||| || || Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATG----CCACC 1742367 Query 1600 TTTAATTTGAACCGGCTTTCCG-TATTTGCAGTTCGATTGCCAGTCCTTTTG-AGCCCAA 1657 |||||||| || || |||||| | ||||| || |||||| || ||||| | ||||| Sbjct 1742368 TTTAATTT-AAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAA 1742426 Query 1658 TCAATTCTTTCCAGTGCT 1675 ||||||||||||| |||| Sbjct 1742427 TCAATTCTTTCCAATGCT 1742444 Score = 77.0 bits (84), Expect = 5e-11 Identities = 168/234 (72%), Gaps = 16/234 (7%) Strand=Plus/Plus Query 1184 TTCCTGAGGTTGTGGTTGAACCGTATCTGGACGTGGTAT-AT-TC-TGGTCCTCGTGTAT 1240 |||||||| |||| |||||| ||||||||| | ||| || || |||| | || || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTC-TATGATGTCGTGGTTGTTGT-TAA 1741934 Query 1241 ATTGGGTCCTCTACGTT-GTAC-ATCTTGAAATAGAGGGGATTTGATATCTCCCAGATAT 1298 |||| |||||| || || |||||||||||||||| ||||| || ||||| || Sbjct 1741935 ATTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1299 ATACGCCACTCTCTGC-CTGACGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT--GT 1355 |||| ||| | | ||| |||| | ||||| ||||||||||| | ||||||| | Sbjct 1741995 ATACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1356 CCTGCGCAGTTAAGGTGTACGT-ATATGGAGCACCCGCACTCTAGATCAATTCG 1408 ||| ||||||| |||| || |||| ||| || || | || |||||| || Sbjct 1742053 CCT--ACAGTTAATGTGTTGGTAATAT-ATGCAACCACAGTATATATCAATGCG 1742103 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 151/206 (73%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 1480 AATTTCGCATTGTGAAGGGTCCAACTCTTTAATGCTGCGTTCTCTTCTTTGTCTAGGAAA 1539 |||| ||||| || || |||||| |||| | || | || || |||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1540 TCTTTATAGCTGGCCCCTTCACCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCC 1599 ||||||||| || |||||||| ||||| || | |||||||||| |||| | | Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATG----ACACA 599757 Query 1600 TTTAATTTGAACCGGCTTTCCGTATTTGCAGTTCGATTGCCAGTCCTTTTG-AGCCCAAT 1658 |||||||||||| | || || || ||||| | |||||| || ||||| | |||||| Sbjct 599756 TTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAAT 599697 Query 1659 CAATTCTTTCCAGTGCTTTAGCTTTA 1684 ||||||||| | ||||| | ||||| Sbjct 599696 AAATTCTTTCTATTGCTTCATCTTTA 599671 Score = 82.4 bits (90), Expect = 1e-12 Identities = 112/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 1486 GCATTGTGAAGGGTCCAACTCTTTAATGCTGCGTTCTCTTCTTTGTCTAGGAAATCTTTA 1545 |||| || || | |||| |||| | || | || || ||||| || | ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1546 TAGCTGGCCCCTTCACCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCCTTTAAT 1605 ||| || ||||||| ||||||| | ||||||||||||||| || |||||||| Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATG----CCACCTTTAAT 596155 Query 1606 TTGAACCGGCTTTCCGTATTTGCAGTTCGATTGCCA 1641 || ||| || || || || ||||| || |||||| Sbjct 596154 TTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8326097616376