Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031455.1 Length=2654 Score E Sequences producing significant alignments: (Bits) Value seq1129 122 1e-24 seq1694 114 2e-22 seq519 111 3e-21 >seq1129 Length=1508174 Score = 122 bits (134), Expect = 1e-24 Identities = 178/248 (72%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 1499 AGATGAATTTAA------CATTGTGGAGTGTCCACGACCTCAAGGCTGCATTTTCCTCTT 1552 ||||||||| || |||| ||||| ||| | | | | ||| |||||||||||| Sbjct 679465 AGATGAATTCAAATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTT 679406 Query 1553 TGTCCAGGAAGTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGA 1612 | || ||||| |||||||| | || || || || ||||| || | | ||||||||||| Sbjct 679405 TATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGA 679346 Query 1613 TCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTCTTTGGG 1672 ||||||||| |||| || || || || |||||||| ||||| ||| ||| | Sbjct 679345 GGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGC 679287 Query 1673 ACCCGAGGAGCTCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGGGACGTCATCAATG 1731 ||| | | |||||| | ||||| | ||||| || |||| |||| || ||||| ||| Sbjct 679286 CCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATG 679228 Query 1732 ACGTTATA 1739 || ||||| Sbjct 679227 ACATTATA 679220 >seq1694 Length=789422 Score = 114 bits (126), Expect = 2e-22 Identities = 175/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 1499 AGATGAATTTAA------CATTGTGGAGTGTCCACGACCTCAAGGCTGCATTTTCCTCTT 1552 ||||||||| || |||| ||||| ||||| | | | ||| |||||||||||| Sbjct 599883 AGATGAATTCAAATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTT 599824 Query 1553 TGTCCAGGAAGTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGA 1612 ||| |||| |||||||| || || || || ||||| || | |||||||||| || Sbjct 599823 CATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGA 599764 Query 1613 TCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTCTTTGGG 1672 | | | |||||||||||| | || || || ||||||| ||||| ||| |||| Sbjct 599763 TGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCA 599704 Query 1673 ACCCGAGGAGCTCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGGGACGTCATCAATG 1731 ||| | | |||||| | ||||| | ||||| || |||| |||| | ||||||||| Sbjct 599703 CCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATG 599645 Query 1732 ACGTTAT 1738 | |||| Sbjct 599644 TCATTAT 599638 Score = 96.9 bits (106), Expect = 6e-17 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1504 AATTTAA-CATTGTGGAGTGTCCACGACCTCAAGGCTGCATTTTCCTCTTTGTCCAGGAA 1562 |||||| ||| ||||||| ||| | ||| ||| ||||||||||||| |||| ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1563 GTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTT 1622 ||| | || || || || | ||||||| | |||||||||||||| || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1623 AATTTGAACTGGCTTTCCGTATTTGCAATT 1652 ||||| ||| || || || || |||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1504 AATTTAACATTGTGGAGTGTCCACGACCTCAAGGCTGCATTTTCCTCTTTGTCCAGGAAG 1563 |||| | |||| || || |||| | | | ||| |||||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1564 TCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTA 1623 |||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1624 ATTTGAACTGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCTCTTTGGGACCCGAGGAG 1682 |||| ||| | |||||| | |||||||| ||||| ||| |||| ||| | | Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1683 CTCTTTCCAGTG----CTTTAGCTTTAGGTA-GTGCGGAGGGACGTCATCAATGACGTTA 1737 |||||||| || || | ||||| ||| ||| |||| || ||||||||||| ||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTA 1742489 Query 1738 TA 1739 || Sbjct 1742490 TA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8383695524560