Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031456.1 Length=2692 Score E Sequences producing significant alignments: (Bits) Value seq1129 109 9e-21 seq519 104 4e-19 seq1694 96.9 6e-17 >seq1129 Length=1508174 Score = 109 bits (120), Expect = 9e-21 Identities = 139/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1597 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAAAGCACG 1656 ||||||||||| || |||||||||||||||| || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1657 ATTGAAGGAATTCCGCCTTTAATTTGAACAGGCTTTCCGTACTTACAGTTGGACTGCCAG 1716 ||||| || | ||||||||| |||| || || || ||||| || || ||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1717 TCTTTTTGAGCACCTATCAATTCCTTCCAGTGCTTTAACTTTAGATATTGCGGACTGACA 1776 |||||||| | || ||||| || ||| | ||||| | ||||| || ||| | ||| Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1777 TCATCGATGA 1786 ||||| |||| Sbjct 679236 TCATCTATGA 679227 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 1558 AATTTAGCATTGTGTAATGTCCAGGCTCTTAA-AGATGAGTTTTCCTCTTTGTCGAGGAA 1616 |||| |||||| |||| |||| |||| | || | |||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1617 ATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAAAGCACGATTGAAGGAATTCCGCCTTT 1676 |||||||||| || ||||| | ||| ||| | |||||||| || || || ||||| Sbjct 1742311 ATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1677 AATTTGAACAGGCTTTCCG-TACTTACAGTTGGACTGCCAGTCTTTTTGAGCACCTATCA 1735 ||||| ||| | |||||| |||| || || ||||| |||||||| | || |||| Sbjct 1742371 AATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1736 ATTCCTTCCAGTGCT 1750 |||| ||||| |||| Sbjct 1742430 ATTCTTTCCAATGCT 1742444 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 1597 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAAAGCACG 1656 |||||||||| || |||||||||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1657 ATTGAAGGAATTCCGCCTTTAATTTGAACAGGCTTTCCGTACTTACAGTTGGACTGCCAG 1716 ||||| | || | | ||||||||||||| | || || ||||| || | ||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1717 TCTTTTTGAGCACCTATCAATTCCTTCCAGTGCTTTAACTTT-AGATATTGCGGACTGAC 1775 |||||||| | || || ||||| ||| | ||||| | |||| || | || | ||| | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-C 599655 Query 1776 ATCATCGATG 1785 |||||| ||| Sbjct 599654 ATCATCAATG 599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8505291108504