Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031458.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq519 127 3e-26 seq1694 123 4e-25 seq1129 123 4e-25 >seq519 Length=3254320 Score = 127 bits (140), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1487 TCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCT 1546 |||| ||| |||| ||| |||||||| || | ||||||||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1547 CACCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAACTGGCTTTCCG- 1605 ||| ||| ||| | |||||||||||||| || |||||||||| ||| | |||||| Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGA 1742389 Query 1606 TATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----CTT 1661 | |||||||| ||||| || || || |||| | | ||||||||| || || Sbjct 1742390 AACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTA 1742449 Query 1662 TAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1703 | ||||| ||| || || || ||||||||||| ||||| Sbjct 1742450 CATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 179/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 2091 TTGTTGACCTCCTCTAGCAGATCTGCCGTCGATTTGGAATTCTCCCCAGTCAACTGTA-T 2149 ||| | || ||| ||||||||||| || || ||||| || || | || || || ||| | Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGT 1743190 Query 2150 CTCCGTCCTTCTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCG 2209 |||| ||||| |||||||| || || || | ||| | ||||||| || | || Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2210 GATGGAAATGTGTTGACCTGGTTGGGGAGA-CCAAATCGAAGAATCTGTAATTCGTGCAC 2268 ||||||| || | | || ||| ||| || | || || |||| | ||| ||||| Sbjct 1743251 GATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAA 1743309 Query 2269 TGGTACTTGCCTTCGAATTGGATGAGAACGTGGAGATGAGGCTCCCCATTCTTATGGAAT 2328 | | || ||| ||| ||||| || || || | ||| || ||||| || | || | | Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2329 TCCCTGCATATTCTGATGAACTT 2351 || |||| | ||| ||||| || Sbjct 1743370 TCTTTGCACACTCTTATGAATTT 1743392 >seq1694 Length=789422 Score = 123 bits (136), Expect = 4e-25 Identities = 203/290 (70%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 1475 CATTCTTGATGGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTAT 1534 |||| | || ||||| ||| |||| || |||||||||| | | |||||||||||| Sbjct 599865 CATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTAT 599806 Query 1535 AGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAA 1594 || ||||| ||||| ||||| || | |||||||||| ||| | | ||||||||||| Sbjct 599805 AGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAA 599746 Query 1595 CTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCC 1654 | | || || || ||||||| ||||| || || || |||| | || ||||||| Sbjct 599745 CAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCT 599686 Query 1655 AGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGT 1714 | ||||| | ||||| || || || | ||||||||| | |||| | || | Sbjct 599685 ATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCAT 599626 Query 1715 TCGAATAGACTCTTGGGTTGAAGTC-TAGATGTCCACTAAGGTAATTATG 1763 || | | ||| | |||||| || ||| || || || | ||||||||| Sbjct 599625 TCTAGAATACTGATTTGTTGAAATCATAG-TGACCGCTTATGTAATTATG 599577 Score = 95.1 bits (104), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1507 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1566 ||||||||||| | || ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1567 ATTGATGGGATTCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATT 1616 ||||||||||| || |||||||||| ||| || || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 123 bits (136), Expect = 4e-25 Identities = 262/385 (68%), Gaps = 12/385 (3%) Strand=Plus/Minus Query 1475 CATTCTTGATGGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTAT 1534 |||| | || ||| | ||| |||| || ||||||||||| | ||||||||||||| Sbjct 679447 CATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTAT 679388 Query 1535 AGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAA 1594 ||| ||||| ||||| ||||| || | | ||||||||||| ||||||||| ||| Sbjct 679387 AGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAA 679328 Query 1595 CTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCC 1654 | || || || || |||||||| ||||| | ||| | | |||| | | |||||| Sbjct 679327 CGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTCT 679269 Query 1655 AGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGT 1714 | ||||| | ||||| || || | || ||||| ||||| ||||| | || | Sbjct 679268 AATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCAT 679209 Query 1715 --TCGAATAGACTCTTGGGTTGAAGTCTA---GATGTCCACTAAGGTAATTATGTGGGCC 1769 | |||| ||| | |||||| |||| |||| || ||| ||||||||| || | Sbjct 679208 TGTGGAAT--ACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTC 679151 Query 1770 TAGGGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGT--CACCTTCTACTATGATACTC 1827 || | || ||| | | || || ||| | |||| | ||||| | || ||||| Sbjct 679150 GAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTATACTT 679093 Query 1828 ACTGGTCTCTCCGGCCGCGCAGCGG 1852 ||||| || |||| |||| ||| Sbjct 679092 TTAGGTCTATCTGGCCACGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239700754100