Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq3069 109 1e-20 seq519 96.9 6e-17 seq1129 95.1 2e-16 seq1694 93.3 7e-16 seq2957 87.8 3e-14 >seq3069 Length=10854949 Score = 109 bits (120), Expect = 1e-20 Identities = 246/366 (67%), Gaps = 18/366 (5%) Strand=Plus/Plus Query 1150 ATTACATTATTAATACTAATCACGCCTAATCTATCTAAATATTTAATACATTGATATTTA 1209 || |||||||| | |||||| || || | | |||||||||||| || ||| | | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1210 AATACTCTTAAGAAACGCCAAGTCTGAGGATGTAAATGA-GTCCAGATCTGGAAGTTCAG 1268 | | | | ||| | ||||| ||| ||| |||| |||||||||| ||| Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGG-TGTTAATGTCGTCCAGATCTTGAA------ 3754376 Query 1269 AAAACATTGATGCATCCC-------CAACGCTTTCCTCAGGTTGTGATTGAACCTGATCT 1321 ||| || |||| | | ||| |||||||| |||||| ||||| |||| Sbjct 3754377 -AAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCT 3754435 Query 1322 GGATTGTTATTATGTCGTGGTTCATCAGGAATGGTCTCTCGTGGTGTTGGGTTATCTTGA 1381 |||| ||| |||||||||| | ||||||||| |||||| |||| ||||| Sbjct 3754436 GGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGA 3754495 Query 1382 AATAGAGGGGATTTGGTACCGTCCAGATATATACGCCATTCTCTGC-TTGAGCTGCAGTG 1440 |||| |||||||||||||| || ||||||||| |||| | ||| | ||| | |||| Sbjct 3754496 AATATAGGGGATTTGGTACTTCTCAAATATATACGTCATTGT-TGCACTAAGCCGTAGTG 3754554 Query 1441 ATGGGATCCCCTGTGCGTGAATCCATGATTGTGGCAGTTAATGGATACAAAGTATGTGCA 1500 | | ||| ||||| ||| ||| || | ||| |||||| | |||||||||| Sbjct 3754555 AGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCA 3754614 Query 1501 CCCGCA 1506 || || Sbjct 3754615 ACCACA 3754620 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 332/509 (65%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 2077 GAGGAGCAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACAAAA-TCT 2135 |||| || || || | | | ||||| | ||| ||||||||| |||||| || ||| ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2136 TTGGGCGCTAATTCTTTGATTACATTAAGAGCCTCTGACTTACTTCCTGCGT---TAAGC 2192 ||||| || ||||| |||| | | || || | ||| ||| | ||| | Sbjct 1748865 TTGGGT-CTTTCTCTTTTATTATTTGTAATGC---TGCATCTCTTGGTGCATAATTAATC 1748920 Query 2193 GCTTGGGCGTAAGCGTCGTTGGCTGATTGTTGTCCTCCTCTTGCAGATCTACCGTCGATC 2252 |||| ||||| | || || || | | ||| || ||||||| || || || Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATT 1748980 Query 2253 TGAAACTCTCCCCATTCGAAGGTGTCTCCGTCCTTGTCCAAATAGGACTTGACG--TCCG 2310 ||||| || |||| || | |||||| ||||| || | || || || || || Sbjct 1748981 TGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAA 1749040 Query 2311 AGCTCGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTTGTTGGGGATACCA 2370 || | |||||||| |||| ||||||||||| || | || || ||| | | Sbjct 1749041 AGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTA 1749099 Query 2371 AATCGAAGAATCGTTGATTCGTGCATCTGAATTTCCCCTCGAATTGGATAAGCACGTGGA 2430 ||||| || | |||||| ||||| | ||||||||| ||| | || | || || | Sbjct 1749100 TGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCA 1749158 Query 2431 GATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGACTTTGATGAACTTCTTGTTAGTTG 2490 ||| || |||| | |||||||||||| || ||||| ||||| || || || | Sbjct 1749159 AATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAG 1749217 Query 2491 CGGTGTCTAGGGCTTTTATTTGGTCAAGGGTTTCCTCTTTTGTAAGCGAACAGTGTGGAT 2550 | || ||| ||| | || ||| || |||||||| || |||| ||| Sbjct 1749218 GGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA 1749277 Query 2551 AAGTTAGGAAATAATTTTTGGCATTTATT 2579 |||| || |||||||||||| ||||||| Sbjct 1749278 AAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Score = 93.3 bits (102), Expect = 7e-16 Identities = 138/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 1293 TTTCCTCAGGTTGTGATTGAACCTGATCTGGATTGTTATTATGTCGTGGTTCATCAGGAA 1352 |||||| || |||| ||||| ||||||||| ||| ||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1353 TGGTCTCTCGTGGTGTTGGGTTATCTTGAAATAGAGGGGATTTGGTACCGTCCAGATATA 1412 | ||||| |||| | | ||||||||||||||||||| |||||||| ||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1413 TACGCCATTCTCTGC-TTGAGCTGCAGTGATGGGATCCCCTGTGCGTGAATCCATGATTG 1471 ||| ||||| | ||| ||||| ||||| | ||||| ||| | ||||||| || Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1472 TGGCAGTTAATG 1483 ||||||||| Sbjct 1742054 CTACAGTTAATG 1742065 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 233/344 (68%), Gaps = 22/344 (6%) Strand=Plus/Minus Query 1150 ATTACATTATTAATACTAATCACGCCTAATCTATCTAAATATTTAATACATTGATATTTA 1209 || |||||||| | |||||| || | | | |||||||||||| || | ||| | | | Sbjct 693918 ATAACATTATTTAAACTAATGACTACAATACATTCTAAATATTTATTAAAATGAAAATCA 693859 Query 1210 AATAC--TCTTAAGAAACGCCAAGTCTGAGGATGTAAATG-AGTCCAGATCTGGAAGTTC 1266 || || ||| | || | ||||| || | ||| |||| ||||||||| ||| Sbjct 693858 AA-ACGTTCTCTA-AATTGAGAAGTC-GAAGGTGTTAATGTCGTCCAGATC------TTC 693808 Query 1267 AGAAAACATTGATGCATCCCCAA-------CGCTTTCCTCAGGTTGTGATTGAACCTGAT 1319 | |||||||| |||| | | || | |||||| | ||||| |||||| || Sbjct 693807 A-AAAACATTCATGCCTTCTGAAATTGTAGGGTTTTCCTAAAGTTGTAGTTGAACTGTAT 693749 Query 1320 CTGGATTGTTATTATGTCGTGGTTCATCAGGAATGGTCTCTCGTGGTGTTGGGTTATCTT 1379 |||||| ||| |||| |||| | | ||| |||||| |||||||| |||||||| Sbjct 693748 CTGGATCTCTATGATGTTGTGGATGTTGTTGAACGGTCTCCTCTGGTGTTGTGTTATCTT 693689 Query 1380 GAAATAGAGGGGATTTGGTACCGTCCAGATATATACGCCATTCTCTGCTTGAGCTGCAGT 1439 | ||||| ||||| || || ||| ||||||||||||| | | | || ||| | Sbjct 693688 GTAATAG-GGGGAATTTAAACTTCCCAAGTATATACGCCATTATTTCACTAAGTCGCAAT 693630 Query 1440 GATGGGATCCCCTGTGCGTGAATCCATGATTGTGGCAGTTAATG 1483 || | || ||| || || ||||||| || | |||||||| Sbjct 693629 GA-GATATTCCCGGTACGAAAATCCATCGTTCATGTAGTTAATG 693587 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1291 GCTTTCCTCAGGTTGTGATTGAACCTGATCTGGATTGTTATTATGTCGTGGTTCATCAGG 1350 |||||||| | || || |||||| |||| ||| ||| |||||| |||| | | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1351 AATGGTCTCTCGTGGTGTTGGGTTATCTTGAAATAGAGGGGATTTGGTACCGTCCAGATA 1410 ||||||||| |||||| ||||||||||||||||||||||||||||| || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1411 TATACGCCATT 1421 |||||| |||| Sbjct 600112 TATACGTCATT 600102 Score = 89.7 bits (98), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 1303 TTGTGATTGAACCTGATCTGGATTGTTATTATGTCGTGGTTCATCAGGAATGGTCTCTCG 1362 |||| |||||| || ||||| ||| ||||||||||| | ||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1363 TGGTGTTGGGTTATCTTGAAATAGAGGGGATTTGGTACCGTCCAGATATATACGCCATTC 1422 | |||| | ||||||||||||||||| |||||||||| ||| |||||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1423 TCTGC-TTGAGCTGCAGTGATGGGATCCCCTGTGCGTGAATCCATGATTGTGGCAGTTAA 1481 | ||| |||| |||||| | ||||| |||| ||||||| || ||| |||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1482 T 1482 | Sbjct 596462 T 596462 >seq2957 Length=4215098 Score = 87.8 bits (96), Expect = 3e-14 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1288 AACGCTTTCCTCAGGTTGTGATTGAACCTGATCTGGATTGTTATTATGTCGTGGTTCATC 1347 || |||||| | ||||||| |||||| |||||||| ||| |||| | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1348 AGGAATGGTCTCTCGTGGTGTTGGGTTATCTTGAAATAGAGGGGATTTGGTACCGTCCAG 1407 ||||| |||| |||||| ||||||||||||||| || |||||||||| | || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1408 ATATATACGCCATTCTCTGC-TTGAGCTGCAGTGATGGGATCC-CCTGTGCGTGAATCCA 1465 ||||||| |||| | ||| ||||| ||| ||| || ||| | ||||| |||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1466 T 1466 | Sbjct 1238927 T 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300