Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031754.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 343/520 (66%), Gaps = 15/520 (3%) Strand=Plus/Plus Query 2067 GAAAATATCTATCTAAATTAGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGG 2125 |||||| || | | ||||| ||||| ||||||||| |||| || |||| ||| ||||| Sbjct 1742997 GAAAAT-TCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCT-TTGGG 1743054 Query 2126 GCTTTCTCCTTCCGTATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCA 2185 | ||||| || ||| | | | | || | |||| | || || || | | Sbjct 1743055 TCATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTG 1743114 Query 2186 TATGCGTCGTTGGCAGTTTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACT 2245 ||| | || | |||| || ||| ||||| ||||||||||| | ||| ||| | Sbjct 1743115 TATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCA 1743174 Query 2246 CCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACAT---CGCTTGAGCTT 2302 | ||| | | |||||| || || || ||||| | ||| |||| | |||| | Sbjct 1743175 TCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---T 1743231 Query 2303 TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGAGGT-GAGGTCGAA 2361 |||| |||| || ||||||| || | || ||| ||| | | | ||| || Sbjct 1743232 TTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAA 1743290 Query 2362 GAATCTATTG-TTCCTGCACTGGAACTTTCCTTCGAACTGGATGAGAACATGCAAGTGAG 2420 |||| |||| || |||| ||| || ||| ||| ||||| || |||||||| || | Sbjct 1743291 AAATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2421 GATTCCCATCTTCATGAAGTTCTCTGCAGATTCTAATGAATTTTTTGTTTACTGGGGTTT 2480 | | ||| | || |||||| |||| | ||| ||||||||| ||| ||| | Sbjct 1743350 GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGT 1743409 Query 2481 GGAGATTTAAGAATTGGGAAAGTGCTTCTCCTTTAGTCAGGGAGCACTTGGGGTAAGTGA 2540 ||| || || || ||| || || |||| || ||||| || | ||| |||||| Sbjct 1743410 TGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGA 1743469 Query 2541 GAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGC 2580 | |||| ||||||| ||||||| |||||| ||||| || Sbjct 1743470 GGAAATGATTTTTGCTATTTATTCTAAACC--TTGGGAGC 1743507 Score = 100 bits (110), Expect = 5e-18 Identities = 329/497 (66%), Gaps = 17/497 (3%) Strand=Plus/Plus Query 2081 AAATTAGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGGGCTTTCTCCTTCCG 2139 ||||||||||| ||||||||| |||| || | |||| ||| ||||| ||||||| || Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT-TTGGGTCTTTCTCTTTTAT 1748883 Query 2140 TATATTGAGGGCCTGAGCT-TTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGG 2198 ||| | | || | || |||| | | || || || || || ||| | || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCGTATACATCTGCAA 1748942 Query 2199 CAGTTTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGA 2258 | ||| || ||| ||| | ||||||||||| | ||| ||| | | ||| | Sbjct 1748943 CTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACAT 1749002 Query 2259 TGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCCTG 2313 |||||| || || || ||||| | ||| || ||| | |||| |||||| || Sbjct 1749003 AGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATATTG 1749059 Query 2314 AATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGAGGTGAGGTCGAAGAATCTATTG-T 2372 || || |||||||| || | ||| | ||| || | |||||| || | |||| | Sbjct 1749060 AACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACC-ATTGAT 1749117 Query 2373 TCCTGCACTGGAACTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGATTCCCATCTT 2432 | |||| ||| || ||| ||||| || || |||||||| || || ||||| | Sbjct 1749118 TGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGTTGC 1749175 Query 2433 CATGAAGTTCTCTGCAGATTCTAATGAATTTTTTGTTTACTGGGGTTTGGAGATTTAAGA 2492 || ||||||||||| | | | |||||||| ||| ||| | ||| ||| || Sbjct 1749176 TGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGA 1749235 Query 2493 ATTGGGAAAGTGCTTCTCCTTTAGTCAGGGAGCACTTGGGGTAAGTGAGAAAATAATTTT 2552 || ||| | || |||| || || | || | ||| |||||||||||||||||| Sbjct 1749236 GATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTT 1749295 Query 2553 TGGCATTTATTTTAAAC 2569 || ||||||| ||||| Sbjct 1749296 TGCTATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652485762752