Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031764.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value seq1129 131 3e-27 seq519 113 7e-22 seq1694 105 1e-19 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1469 GCATTCTTTAACGTCCAGTTTCTGAGCGATGCATTTTCCGCTTTGTTCAGGAAATCTTTA 1528 ||||| | | |||| | || |||| | |||||||| |||| | |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1529 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGG 1588 |||| ||||| ||||| ||||| || | | ||||||||| | |||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1589 ACTGGCTTACCGTACTTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTC 1648 || || || || ||||||||||| ||||| ||||||| |||| ||||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCA-ATCTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1649 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCTATTACGTTATA 1698 | ||||| | |||| || |||| || | || |||||||| || ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 113 bits (124), Expect = 7e-22 Identities = 170/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 1469 GCATTCTTTAACGTCCAGTTTCTGAGCGATGCATTTTCCGCTTTGTTCAGGAAATCTTTA 1528 ||||| | || | |||| || |||| | | |||||||| | || | |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1529 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGG 1588 ||| |||||||||| ||| ||| | ||||||||||| || || |||||||| Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1589 ACTGGCTTACCGTACTTGCAATTTGACTGCCACATC-TTTTGAGCCCCTATCAATTCTTT 1647 || | || | |||||||||| ||||| ||| ||||| |||| ||||||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCA-ATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1648 CCAGTG----CTTTAGCTTTAGATA-GTGCGGTGCGACGTCATCTATTACGTTATA 1698 ||| || || | ||||| || ||| || || || ||||| || || ||||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 105 bits (116), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 1469 GCATTCTTTAACGTCCAGTTTCTGAGCGATGCATTTTCCGCTTTGTTCAGGAAATCTTTA 1528 ||||| | | |||||| || |||| | |||||||| ||| | | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1529 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGG 1588 ||| ||||| ||||| ||||| || | |||||||||| || | | |||||| | Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1589 ACTGGCTTACCGTACTTGCAATTTGACTGCCACATC-TTTTGAGCCCCTATCAATTCTTT 1647 || | || || |||||||||| ||||| ||| ||||| |||| || |||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCA-ATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1648 CCAGTGCTTTAGCTTTA 1664 | | ||||| | ||||| Sbjct 599687 CTATTGCTTCATCTTTA 599671 Score = 80.6 bits (88), Expect = 4e-12 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1500 CATTTTCCGCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCA 1559 |||||||| |||| | || ||||||| | ||| ||||| |||| ||||||| | | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1560 CGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTACTTGCAATT 1611 |||||||||| || || |||||||| || || || || ||||||||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8210901800008