Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_032006.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq1129 127 3e-26 seq519 118 2e-23 seq1694 105 1e-19 >seq1129 Length=1508174 Score = 127 bits (140), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 1524 TTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACG 1583 ||||||||||| || || ||||||||||||| || || || |||||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1584 ATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAG 1643 |||||||| | | ||||||||| |||| || || || || ||||| || |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1644 TCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACG 1703 | | || | ||||||| | |||||| ||||||||||||||| || || || || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1704 TCATCAATGACGTTGTA 1720 ||||| ||||| || || Sbjct 679236 TCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1524 TTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACG 1583 |||||||| || || || |||||||||||| || ||||| | | ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1584 ATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCG-TATTTGCAGTTTGATTGCCA 1642 |||||||| ||||| |||||||||| ||| | |||||| | ||||| || |||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1643 GTCCCGTTGGGCCCCAATGAGCTCTTTCCAATG----CTTCATCTTTAGATATTGCGGTG 1698 || ||| ||||||| | ||||||||||| || |||||||| ||| || | Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG 1742469 Query 1699 TGACGTCATCAATGACGTTGTA 1720 || ||||||||||| || || Sbjct 1742470 CTACATCATCAATGACATTATA 1742491 Score = 80.6 bits (88), Expect = 4e-12 Identities = 120/160 (75%), Gaps = 13/160 (8%) Strand=Plus/Plus Query 1263 TGTTATCTTGAAATAGAGGGGATTTTGGACCTCCCA--GATAAACGCGCCATTCTGTGC- 1319 |||||||||||||||||||| |||| | | ||||| |||| || | |||| | ||| Sbjct 1741954 TGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACAC--CATTGT-TGCA 1742010 Query 1320 CTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT--TGCCGACGCAGTCGATGTG 1377 |||| | ||||| ||||||||||| | ||||||| | || | |||| ||||| Sbjct 1742011 CTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTA--CAGTTAATGTG 1742067 Query 1378 TTGGT-ATATGGTGCAGCCACAGTTTAGGTCTATGCGCTT 1416 ||||| |||| |||| ||||||| || || |||||||| Sbjct 1742068 TTGGTAATAT-ATGCAACCACAGTATATATCAATGCGCTT 1742106 >seq1694 Length=789422 Score = 105 bits (116), Expect = 1e-19 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1524 TTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACG 1583 |||||||||| || | |||||||||||| || || || |||||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1584 ATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAG 1643 ||||||| ||| | | |||||||||||| | || || || ||||| | |||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1644 TCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTA 1686 || ||| ||||||| | |||||| | ||||||||||||| Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTA 599671 Score = 84.2 bits (92), Expect = 4e-13 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1524 TTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACG 1583 ||||||||||| || | |||||| | ||| || || || | | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1584 ATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCA 1642 |||||||| ||||| |||||||||| ||| || || || || ||||| || |||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313298081224